Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 236655 | . | T | A | CCDS3853.1:NM_004168.2:c.1373tTg>tAg_NP_004159.2:p.458L>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | LEU | A:426 | A:458 | 0.0 | 0.0 | H | -67.1 | -43.6 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
5.231 9.549 7.593 |
N N O |
O2 O5 O |
||
| LEU | C:426 | C:458 | 0.0 | 0.0 | H | -65.1 | -44.3 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | LEU | A:458 | A:416 | 0.0 | 0.0 | H | -70.2 | -46.5 | 0.0 | 0.0 | 0.0 |
FAD |
4.496 |
N |
O2 |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | LEU | A:458 | A:416 | 0.0 | 0.0 | H | -61.0 | -51.4 | 0.0 | 0.0 | 0.0 |
FAD |
4.641 |
N |
O2 |
||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -65.0 | -47.3 | 0.0 | 0.0 | 0.0 |
FAD HOH |
4.880 4.939 |
N N |
O2 O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -66.9 | -45.7 | 0.0 | 0.0 | 0.0 |
FAD |
5.292 |
N |
O2 |
||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -65.2 | -54.1 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.584 8.588 |
N N |
O2 O8 |
||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -66.7 | -54.9 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.350 9.496 |
N N |
O2 O7 |
||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -65.2 | -57.2 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.518 8.900 |
N N |
O2 O9 |
||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -65.4 | -48.3 | 0.0 | 0.0 | 0.0 |
FAD |
4.606 |
N |
O2 |
||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -59.2 | -63.2 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.651 9.020 |
N N |
O2 O9 |
||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 1.0 | 0.006 | H | -74.3 | -51.3 | 1.0 | 0.006 | 0.0 |
FAD MLI |
4.947 8.888 |
N N |
O2 O9 |
||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -73.1 | -50.5 | 0.0 | 0.0 | 0.0 |
FAD |
4.757 |
N |
O2 |
||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -74.4 | -42.5 | 0.0 | 0.0 | 0.0 |
FAD |
4.755 |
N |
O2 |
||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -72.0 | -45.2 | 0.0 | 0.0 | 0.0 |
FAD |
4.807 |
N |
O2 |
||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -68.9 | -40.7 | 0.0 | 0.0 | 0.0 |
FAD |
4.575 |
N |
O2 |
||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -72.2 | -54.0 | 0.0 | 0.0 | 0.0 |
FAD MLI |
5.019 8.665 |
N N |
O2 O7 |
||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -72.9 | -52.2 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.661 9.063 |
N N |
O2 O8 |
||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -67.2 | -49.5 | 0.0 | 0.0 | 0.0 |
FAD |
4.931 |
N |
O2 |
||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -66.7 | -51.6 | 0.0 | 0.0 | 0.0 |
FAD MLI |
4.598 9.648 |
N N |
O2 O9 |
||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -68.4 | -49.3 | 0.0 | 0.0 | 0.0 |
FAD |
5.277 |
N |
O2 |
||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -66.3 | -52.8 | 0.0 | 0.0 | 0.0 |
FAD HOH |
4.484 8.589 |
N N |
O2 O |
||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -78.6 | -39.0 | 0.0 | 0.0 | 0.0 |
FAD |
4.790 |
N |
O2 |
||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -65.5 | -46.8 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
4.513 8.263 6.726 |
N N O |
O2 O1 O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | LEU | A:416 | A:416 | 0.0 | 0.0 | H | -67.0 | -52.9 | 0.0 | 0.0 | 0.0 |
FAD OAA |
4.653 8.301 |
N N |
O2 O1 |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -68.0 | -51.4 | 0.0 | 0.0 | 0.0 |
FAD TEO HOH |
4.661 7.771 5.618 |
N N CD2 |
O2 O4B O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -66.4 | -54.7 | 0.0 | 0.0 | 0.0 |
FAD HOH |
4.598 5.688 |
N CD2 |
O2 O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -65.8 | -51.8 | 0.0 | 0.0 | 0.0 |
FAD Y3P HOH |
4.717 7.731 5.860 |
N N CD2 |
O2 O5 O |
||
| LEU | E:415 | N:415 | 0.0 | 0.0 | H | -66.3 | -52.4 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -67.1 | -47.8 | 0.0 | 0.0 | 0.0 |
FAD TEO HOH |
4.677 7.880 5.870 |
N N CD2 |
O2 O4A O |
||
| LEU | E:415 | N:415 | 0.0 | 0.0 | H | -68.4 | -46.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -71.9 | -53.0 | 0.0 | 0.0 | 0.0 |
FAD MLI HOH |
4.599 9.232 5.743 |
N N CD2 |
O2 O9 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -67.6 | -48.4 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
4.660 7.777 5.803 |
N N CD2 |
O2 O2 O |
||
| LEU | E:415 | N:415 | 0.0 | 0.0 | H | -69.7 | -48.1 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -62.0 | -57.1 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
4.706 7.647 5.675 |
N N CD2 |
O2 O2 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -63.9 | -47.4 | 0.0 | 0.0 | 0.0 |
FAD OAA UNL HOH |
4.767 7.885 9.591 5.666 |
N N C CD2 |
O2 O2 N1 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -67.6 | -48.1 | 0.0 | 0.0 | 0.0 |
FAD Y3P UNL HOH |
4.769 7.818 9.442 5.703 |
N N C CD2 |
O2 O5 N1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -66.7 | -49.3 | 0.0 | 0.0 | 0.0 |
FAD OAA UNL HOH |
4.584 7.746 9.681 5.819 |
N N C CD2 |
O2 O2 N1 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -69.3 | -50.9 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
4.609 7.767 5.814 |
N N CD2 |
O2 O2 O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -66.5 | -49.5 | 0.0 | 0.0 | 0.0 |
FAD OAA UNL UNL HOH |
4.581 7.784 9.664 9.431 5.577 |
N N C CD2 CD2 |
O2 O2 N1 O O |
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| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LEU | A:415 | A:415 | 0.0 | 0.0 | H | -63.7 | -54.4 | 0.0 | 0.0 | 0.0 |
FAD OAA UNL HOH |
4.696 7.744 9.589 5.724 |
N N C CD2 |
O2 O2 N1 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | LEU | A:458 | A:458 | 0.0 | 0.0 | H | -63.2 | -52.9 | |