Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 236676 . G A CCDS3853.1:NM_004168.2:c.1394cGg>cAg_NP_004159.2:p.465R>Q Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:433 A:465 64.0 0.284 H -66.5 -37.7 64.0 0.284 0.0 HOH
 5.838
 NH1
 O
ARG C:433 C:465 65.0 0.289 H -67.1 -34.6 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:465 A:423 53.0 0.236 H -55.4 -46.1 53.0 0.236 0.0 HOH
 5.707
 NE
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:465 A:423 50.0 0.222 H -65.2 -29.9 50.0 0.222 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:423 A:423 61.0 0.271 H -63.4 -43.6 61.0 0.271 0.0 HOH
 3.092
 CD
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:423 A:423 60.0 0.267 H -71.4 -42.6 60.0 0.267 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 61.0 0.271 H -54.5 -43.7 61.0 0.271 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 66.0 0.293 H -55.6 -39.7 66.0 0.293 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 65.0 0.289 H -55.1 -44.0 65.0 0.289 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 51.0 0.227 H -66.3 -41.5 51.0 0.227 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 57.0 0.253 H -59.1 -48.3 57.0 0.253 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 61.0 0.271 H -63.1 -40.0 61.0 0.271 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 60.0 0.267 H -60.1 -36.6 60.0 0.267 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 63.0 0.28 H -68.2 -37.4 63.0 0.28 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 69.0 0.307 H -65.1 -41.4 69.0 0.307 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 49.0 0.218 H -66.9 -38.0 49.0 0.218 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 53.0 0.236 H -63.1 -40.2 53.0 0.236 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 57.0 0.253 H -61.7 -42.0 57.0 0.253 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 55.0 0.244 H -67.1 -36.8 55.0 0.244 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 50.0 0.222 H -59.3 -41.2 50.0 0.222 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 71.0 0.316 H -33.0 -52.3 71.0 0.316 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 65.0 0.289 H -61.0 -43.2 65.0 0.289 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:423 A:423 65.0 0.289 H -67.5 -41.1 65.0 0.289 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:423 A:423 64.0 0.284 H -63.0 -34.6 64.0 0.284 0.0 HOH
 2.875
 NH2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:423 A:423 59.0 0.262 H -63.3 -44.6 59.0 0.262 0.0 HOH
 6.155
 O
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:422 A:422 95.0 0.422 H -69.9 -41.7 95.0 0.422 0.0 UNL
HOH
 9.748
2.218
 NH2
NE
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:422 A:422 86.0 0.382 H -73.7 -42.5 86.0 0.382 0.0 HOH
 2.396
 NE
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:422 A:422 89.0 0.396 H -61.6 -41.2 89.0 0.396 0.0 UNL
UNL
UNL
UNL
HOH
 6.009
3.831
4.523
9.017
2.316
 O
NH1
NE
O
NE
 C1
O3
O
O
O
ARG E:422 N:422 90.0 0.4 H -62.0 -41.2 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:422 A:422 92.0 0.409 H -67.4 -39.7 92.0 0.409 0.0 HOH
 2.368
 NE
 O
ARG E:422 N:422 89.0 0.396 H -67.9 -39.6 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:422 A:422 73.0 0.324 H -70.5 -40.0 73.0 0.324 0.0 UNL
HOH
 9.927
3.512
 NH2
CB
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:422 A:422 86.0 0.382 H -64.7 -42.9 86.0 0.382 0.0 UNL
HOH
 9.271
2.583
 NH2
NE
 C2
O
ARG E:422 N:422 84.0 0.373 H -64.7 -43.2 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 89.0 0.396 H -66.0 -32.8 89.0 0.396 0.0 UNL
UNL
UNL
HOH
 6.484
4.664
2.700
3.059
 O
NE
NE
NH1
 O1
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 87.0 0.387 H -71.2 -33.2 87.0 0.387 0.0 BCT
UNL
UNL
HOH
 5.895
4.846
3.649
2.758
 O
CG
NH1
NE
 O1
N1
C
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 91.0 0.404 H -67.7 -38.9 91.0 0.404 0.0 UNL
HOH
 2.880
3.186
 NE
NH1
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:422 A:422 81.0 0.36 H -61.4 -41.2 81.0 0.36 0.0 HOH
 2.327
 NH1
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 87.0 0.387 H -61.9 -36.9 87.0 0.387 0.0 UNL
HOH
 2.322
3.499
 NH1
CB
 O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 90.0 0.4 H -69.0 -32.0 90.0 0.4 0.0 HOH
 3.514
 NE
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:422 A:422 89.0 0.396 H -63.9 -42.1 89.0 0.396 0.0 UNL
UNL
HOH
 6.457
2.827
3.227
 O
NE
NH1
 O
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:465 A:465 72.0 0.32 H -66.7 -41.4