Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 236683 | . | T | A | CCDS3853.1:NM_004168.2:c.1401tgT>tgA_NP_004159.2:p.467C>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | CYS | A:435 | A:467 | 0.0 | 0.0 | H | -62.2 | -42.7 | 0.0 | 0.0 | 0.0 |
HOH |
5.252 |
SG |
O |
||
| CYS | C:435 | C:467 | 0.0 | 0.0 | H | -63.1 | -46.5 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | CYS | A:467 | A:425 | 0.0 | 0.0 | H | -47.9 | -44.4 | 0.0 | 0.0 | 0.0 |
HOH |
7.422 |
N |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | CYS | A:467 | A:425 | 0.0 | 0.0 | H | -61.3 | -45.9 | 0.0 | 0.0 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -62.1 | -52.2 | 0.0 | 0.0 | 0.0 |
HOH |
4.903 |
SG |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -59.9 | -49.0 | 0.0 | 0.0 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -55.1 | -43.0 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -54.6 | -43.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -54.8 | -47.7 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -56.9 | -41.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -45.5 | -41.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -60.7 | -32.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -57.0 | -35.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -61.5 | -36.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -64.1 | -34.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -64.3 | -38.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -63.6 | -37.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -62.2 | -42.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -63.6 | -39.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -55.7 | -39.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -56.2 | -33.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -56.2 | -41.6 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -62.7 | -36.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -58.3 | -43.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.725 |
SG |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:425 | A:425 | 0.0 | 0.0 | H | -55.7 | -49.7 | 0.0 | 0.0 | 0.0 |
HOH |
8.279 |
C |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -60.1 | -38.2 | 0.0 | 0.0 | 0.0 |
HOH |
5.627 |
SG |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -46.0 | -40.1 | 0.0 | 0.0 | 0.0 |
HOH |
5.667 |
SG |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -54.3 | -47.7 | 0.0 | 0.0 | 0.0 |
UNL UNL UNL UNL HOH |
5.882 9.242 9.934 9.299 5.304 |
N N O O SG |
C1 O1 O O O |
||
| CYS | E:424 | N:424 | 0.0 | 0.0 | H | -52.4 | -48.7 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -59.0 | -45.6 | 0.0 | 0.0 | 0.0 |
HOH |
5.313 |
SG |
O |
||
| CYS | E:424 | N:424 | 0.0 | 0.0 | H | -59.1 | -44.5 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -63.5 | -34.0 | 0.0 | 0.0 | 0.0 |
HOH |
5.975 |
N |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -55.9 | -48.1 | 0.0 | 0.0 | 0.0 |
HOH |
5.353 |
SG |
O |
||
| CYS | E:424 | N:424 | 0.0 | 0.0 | H | -56.5 | -48.0 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -61.6 | -44.8 | 0.0 | 0.0 | 0.0 |
UNL UNL UNL HOH |
6.562 7.563 8.938 5.470 |
N C C SG |
O1 O O O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -63.5 | -42.6 | 0.0 | 0.0 | 0.0 |
BCT UNL UNL UNL HOH |
6.131 7.742 8.520 9.013 5.090 |
N C O N SG |
O1 N3 N3 O O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -58.6 | -41.3 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.153 5.314 |
C SG |
O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -57.8 | -39.7 | 0.0 | 0.0 | 0.0 |
UNL UNL HOH |
5.802 9.404 6.233 |
N SG N |
O4 O O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -58.6 | -44.6 | 0.0 | 0.0 | 0.0 |
UNL UNL HOH |
7.374 6.863 6.434 |
N C N |
O O O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -60.1 | -41.3 | 0.0 | 0.0 | 0.0 |
UNL HOH |
6.643 7.532 |
O C |
O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:424 | A:424 | 0.0 | 0.0 | H | -58.1 | -45.2 | 0.0 | 0.0 | 0.0 |
UNL UNL HOH |
6.245 9.121 5.439 |
N C SG |
O O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | CYS | A:467 | A:467 | 0.0 | 0.0 | H | -59.2 | -46.8 | |