Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 236696 . G A CCDS3853.1:NM_004168.2:c.1414Gaa>Aaa_NP_004159.2:p.472E>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLU A:440 A:472 58.0 0.305 H -77.0 -20.0 58.0 0.305 0.0 HOH
 3.505
 OE2
 O
GLU C:440 C:472 67.0 0.353 H -64.9 -41.6 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ALA A:472 A:430 17.0 0.148 H -48.0 -53.6 17.0 0.148 0.0 HOH
 9.516
 N
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ALA A:472 A:430 20.0 0.174 H -49.8 -51.7 20.0 0.174 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ALA A:430 A:430 19.0 0.165 H -63.9 -30.3 19.0 0.165 0.0 HOH
 5.800
 CB
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ALA A:430 A:430 18.0 0.157 H -65.9 -29.1 18.0 0.157 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 16.0 0.139 H -51.8 -31.8 16.0 0.139 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 8.0 0.07 H -56.6 -13.1 8.0 0.07 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 16.0 0.139 H -50.8 -32.4 16.0 0.139 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 18.0 0.157 H -54.1 -54.2 18.0 0.157 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 17.0 0.148 H -62.1 -37.2 17.0 0.148 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 21.0 0.183 H -68.2 -22.4 21.0 0.183 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 13.0 0.113 H -58.8 -41.2 13.0 0.113 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 13.0 0.113 H -75.6 -52.7 13.0 0.113 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 18.0 0.157 H -64.2 -28.0 18.0 0.157 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 20.0 0.174 H -61.2 -26.2 20.0 0.174 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 20.0 0.174 H -58.8 -24.1 20.0 0.174 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 18.0 0.157 H -60.4 -17.5 18.0 0.157 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 13.0 0.113 H -59.1 -32.6 13.0 0.113 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 19.0 0.165 H -60.3 -34.9 19.0 0.165 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 16.0 0.139 H -47.8 -29.0 16.0 0.139 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 23.0 0.2 H -58.6 -15.5 23.0 0.2 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:430 A:430 22.0 0.191 H -67.3 -18.3 22.0 0.191 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ALA A:430 A:430 17.0 0.148 H -50.3 -36.5 17.0 0.148 0.0 HOH
 5.796
 CB
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ALA A:430 A:430 18.0 0.157 H -45.9 -45.8 18.0 0.157 0.0 HOH
 6.126
 CB
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ALA A:429 A:429 41.0 0.357 H -66.5 -29.0 41.0 0.357 0.0 UNL
HOH
 3.357
2.858
 O
O
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ALA A:429 A:429 33.0 0.287 H -57.8 -51.4 33.0 0.287 0.0 HOH
 3.467
 CB
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ALA A:429 A:429 27.0 0.235 H -65.3 -29.4 27.0 0.235 0.0 UNL
UNL
UNL
UNL
UNL
HOH
 8.190
9.592
7.242
2.569
7.015
5.945
 N
CB
O
O
C
CB
 O1
O2
O
O
O
O
ALA E:429 N:429 41.0 0.357 H -65.3 -29.9 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ALA A:429 A:429 43.0 0.374 H -62.4 -25.5 43.0 0.374 0.0 HOH
 2.672
 O
 O
ALA E:429 N:429 42.0 0.365 H -62.8 -25.4 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ALA A:429 A:429 42.0 0.365 H -55.4 -34.3 42.0 0.365 0.0 UNL
HOH
 3.243
3.099
 O
O
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ALA A:429 A:429 37.0 0.322 H -66.7 -24.6 37.0 0.322 0.0 UNL
HOH
 4.574
2.470
 CB
O
 C2
O
ALA E:429 N:429 40.0 0.348 H -67.2 -24.1 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 43.0 0.374 H -62.2 -42.1 43.0 0.374 0.0 UNL
UNL
UNL
HOH
 8.355
6.444
7.914
3.247
 N
CB
CB
CB
 O1
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 44.0 0.383 H -66.9 -29.8 44.0 0.383 0.0 BCT
UNL
UNL
HOH
 8.133
5.583
9.846
3.425
 N
CB
N
CB
 O1
N3
N1
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 43.0 0.374 H -67.6 -35.6 43.0 0.374 0.0 UNL
HOH
 8.177
3.872
 CB
CB
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ALA A:429 A:429 41.0 0.357 H -66.9 -33.1 41.0 0.357 0.0 UNL
HOH
 7.717
2.333
 N
O
 O4
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 43.0 0.374 H -66.0 -34.6 43.0 0.374 0.0 UNL
UNL
HOH
 9.042
6.212
3.419
 N
CB
CB
 O
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 45.0 0.391 H -63.2 -30.2 45.0 0.391 0.0 UNL
HOH
 6.515
6.849
 N
CB
 O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:429 A:429 41.0 0.357 H -70.4 -31.4 41.0 0.357 0.0 UNL
UNL
HOH
 8.133
8.280
6.227
 N
CB
CB
 O
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLU A:472 A:472 88.0 0.463 H -61.6 -39.7