Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 240478 . A C CCDS3853.1:NM_004168.2:c.1438Aaa>Caa_NP_004159.2:p.480K>Q Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 LYS A:448 A:480 89.0 NA -61.0 112.8 89.0 NA NA HOH
 8.167
 O
 O
LYS C:448 C:480 91.0 NA -61.3 118.2 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 LYS A:480 A:438 168.0 0.84 -51.5 109.0 168.0 0.84 0.0 HOH
 8.197
 C
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 LYS A:480 A:438 159.0 0.795 -47.0 118.1 159.0 0.795 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 LYS A:438 A:438 169.0 0.845 -57.8 121.7 169.0 0.845 0.0 HOH
 2.676
 N
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 LYS A:438 A:438 170.0 0.85 -60.0 124.6 170.0 0.85 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 155.0 0.775 -54.8 110.9 155.0 0.775 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 156.0 0.78 -56.8 116.7 156.0 0.78 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 182.0 0.91 -55.6 117.0 182.0 0.91 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 161.0 0.805 -40.5 118.5 161.0 0.805 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 157.0 0.785 -45.0 113.5 157.0 0.785 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 142.0 0.71 -52.1 116.8 142.0 0.71 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 144.0 0.72 -55.0 123.7 144.0 0.72 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 161.0 0.805 -46.0 119.1 161.0 0.805 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 161.0 0.805 -51.8 121.5 161.0 0.805 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 166.0 0.83 -56.4 116.6 166.0 0.83 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 164.0 0.82 -61.2 110.0 164.0 0.82 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 158.0 0.79 -53.6 116.2 158.0 0.79 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 194.0 0.97 -51.1 133.4 194.0 0.97 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 189.0 0.945 -52.8 131.2 189.0 0.945 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 162.0 0.81 -54.4 110.5 162.0 0.81 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 156.0 0.78 -42.5 101.4 156.0 0.78 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:438 A:438 159.0 0.795 -55.0 104.7 159.0 0.795 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 LYS A:438 A:438 149.0 0.745 -57.9 101.6 149.0 0.745 0.0 HOH
 3.481
 CA
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 LYS A:438 A:438 142.0 0.71 -62.6 114.4 142.0 0.71 0.0 HOH
 6.857
 O
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 PRO A:437 A:437 115.0 0.793 -51.4 133.2 115.0 0.793 0.0 HOH
 4.714
 N
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 PRO A:437 A:437 113.0 0.779 -49.9 117.0 113.0 0.779 0.0 HOH
 4.568
 CA
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 PRO A:437 A:437 113.0 0.779 -57.6 138.2 113.0 0.779 0.0 HOH
 4.481
 O
 O
PRO E:437 N:437 114.0 0.786 -59.8 137.4 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 PRO A:437 A:437 116.0 0.8 -58.8 143.6 116.0 0.8 0.0 HOH
 3.152
 CA
 O
PRO E:437 N:437 115.0 0.793 -57.4 143.8 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 PRO A:437 A:437 111.0 0.766 -48.3 127.5 111.0 0.766 0.0 HOH
 4.852
 N
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 PRO A:437 A:437 113.0 0.779 -56.3 141.9 113.0 0.779 0.0 HOH
 3.176
 CA
 O
PRO E:437 N:437 114.0 0.786 -56.7 141.5 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 117.0 0.807 -56.6 127.6 117.0 0.807 0.0 HOH
 8.345
 O
 O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 114.0 0.786 -56.8 127.4 114.0 0.786 0.0 UNL
HOH
 5.911
5.127
 C
C
 C2
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 118.0 0.814 -60.2 115.9 118.0 0.814 0.0 HOH
 6.124
 N
 O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 PRO A:437 A:437 110.0 0.759 -52.1 131.5 110.0 0.759 0.0 HOH
 9.464
 C
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 113.0 0.779 -57.6 123.3 113.0 0.779 0.0
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 116.0 0.8 -57.7 124.0 116.0 0.8 0.0 HOH
 9.517
 O
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:437 A:437 115.0 0.793 -55.8 118.3 115.0 0.793 0.0 HOH
 6.230
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 LYS A:480 A:480 189.0 0.945 -57.3 119.8