Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 240508 . G A CCDS3853.1:NM_004168.2:c.1468Gaa>Aaa_NP_004159.2:p.490E>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLU A:458 A:490 42.0 NA H -61.3 -36.1 42.0 NA NA HOH
 7.570
 O
 O
GLU C:458 C:490 93.0 0.489 H -66.4 -33.4 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLU A:490 A:448 88.0 0.463 H -51.4 -40.2 88.0 0.463 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLU A:490 A:448 101.0 0.532 H -43.8 -40.4 101.0 0.532 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLU A:448 A:448 86.0 0.453 H -49.1 -42.0 86.0 0.453 0.0 HOH
 3.168
 N
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLU A:448 A:448 84.0 0.442 H -52.6 -38.2 84.0 0.442 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 106.0 0.558 H -63.3 -47.1 106.0 0.558 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 104.0 0.547 H -67.8 -48.2 104.0 0.547 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 110.0 0.579 H -66.1 -47.3 110.0 0.579 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 104.0 0.547 H -57.5 -49.0 104.0 0.547 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 121.0 0.637 H -40.3 -50.9 121.0 0.637 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 120.0 0.632 H -65.6 -53.0 120.0 0.632 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 111.0 0.584 H -64.7 -47.5 111.0 0.584 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 117.0 0.616 H -56.7 -41.1 117.0 0.616 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 98.0 0.516 H -68.7 -42.9 98.0 0.516 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 92.0 0.484 H -74.6 -25.3 92.0 0.484 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 88.0 0.463 H -63.4 -30.5 88.0 0.463 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 96.0 0.505 H -65.7 -39.4 96.0 0.505 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 82.0 0.432 H -67.6 -41.2 82.0 0.432 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 88.0 0.463 H -67.3 -35.4 88.0 0.463 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 107.0 0.563 H -39.3 -42.6 107.0 0.563 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 119.0 0.626 H -51.4 -51.2 119.0 0.626 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:448 A:448 85.0 0.447 H -65.5 -35.9 85.0 0.447 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:448 A:448 88.0 0.463 H -55.2 -30.0 88.0 0.463 0.0
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:448 A:448 114.0 0.6 H -49.6 -49.7 114.0 0.6 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLU A:447 A:447 95.0 0.5 H -51.2 -31.8 95.0 0.5 0.0 HOH
 4.715
 N
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLU A:447 A:447 91.0 0.479 H -47.0 -26.8 91.0 0.479 0.0 HOH
 5.241
 N
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLU A:447 A:447 110.0 0.579 H -62.1 -34.5 110.0 0.579 0.0 UNL
UNL
UNL
UNL
UNL
HOH
 5.057
5.535
9.199
9.799
8.001
2.910
 O
N
O
O
N
O
 C2
N3
O
O
O
O
GLU E:447 N:447 105.0 0.553 H -63.3 -33.8 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:447 A:447 114.0 0.6 H -60.1 -33.7 114.0 0.6 0.0 HOH
 3.004
 O
 O
GLU E:447 N:447 115.0 0.605 H -60.1 -35.0 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:447 A:447 115.0 0.605 H -54.9 -31.7 115.0 0.605 0.0 HOH
 7.126
 O
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLU A:447 A:447 98.0 0.516 H -60.2 -35.0 98.0 0.516 0.0 UNL
HOH
 5.322
3.174
 OE2
O
 C2
O
GLU E:447 N:447 119.0 0.626 H -60.4 -34.3 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 116.0 0.611 H -71.1 -15.7 116.0 0.611 0.0 UNL
HOH
 5.280
4.598
 O
N
 O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 117.0 0.616 H -72.4 -28.3 117.0 0.616 0.0 HOH
 4.481
 N
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 106.0 0.558 H -61.2 -36.2 106.0 0.558 0.0 UNL
HOH
 8.303
4.782
 O
N
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLU A:447 A:447 114.0 0.6 H -68.4 -25.9 114.0 0.6 0.0
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 115.0 0.605 H -69.1 -20.3 115.0 0.605 0.0 UNL
 9.596
 OE1
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 123.0 0.647 H -67.1 -22.9 123.0 0.647 0.0 HOH
 7.460
 O
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:447 A:447 105.0 0.553 H -55.5 -35.2 105.0 0.553 0.0 UNL
HOH
 8.364
4.787
 O
N
 O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLU A:490 A:490 71.0 0.374 H -57.6 -40.5