Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 251113 | . | C | A | CCDS3853.1:NM_004168.2:c.1558Caa>Aaa_NP_004159.2:p.520Q>K | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLN | A:488 | A:520 | 29.0 | 0.161 | H | -70.1 | -33.3 | 29.0 | 0.161 | 0.0 | ||||||
| GLN | C:488 | C:520 | 35.0 | 0.194 | H | -72.2 | -28.3 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLN | A:520 | A:478 | 47.0 | 0.261 | H | -68.0 | -43.4 | 47.0 | 0.261 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLN | A:520 | A:478 | 50.0 | 0.278 | H | -67.9 | -50.8 | 50.0 | 0.278 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:478 | A:478 | 48.0 | 0.267 | H | -60.9 | -34.7 | 48.0 | 0.267 | 0.0 |
HOH |
7.076 |
N |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:478 | A:478 | 51.0 | 0.283 | H | -61.7 | -31.5 | 51.0 | 0.283 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 47.0 | 0.261 | H | -68.3 | -37.1 | 47.0 | 0.261 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 51.0 | 0.283 | H | -66.8 | -34.0 | 51.0 | 0.283 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 44.0 | 0.244 | H | -65.6 | -36.2 | 44.0 | 0.244 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 45.0 | 0.25 | H | -71.3 | -31.1 | 45.0 | 0.25 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 45.0 | 0.25 | H | -68.9 | -25.6 | 45.0 | 0.25 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 47.0 | 0.261 | H | -59.3 | -39.6 | 47.0 | 0.261 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 48.0 | 0.267 | H | -63.3 | -30.6 | 48.0 | 0.267 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 49.0 | 0.272 | H | -66.7 | -35.5 | 49.0 | 0.272 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 45.0 | 0.25 | H | -69.7 | -31.2 | 45.0 | 0.25 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 53.0 | 0.294 | H | -69.8 | -43.7 | 53.0 | 0.294 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 44.0 | 0.244 | H | -71.1 | -32.7 | 44.0 | 0.244 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 42.0 | 0.233 | H | -66.2 | -33.0 | 42.0 | 0.233 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 45.0 | 0.25 | H | -73.1 | -25.7 | 45.0 | 0.25 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 51.0 | 0.283 | H | -72.3 | -27.0 | 51.0 | 0.283 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 49.0 | 0.272 | H | -66.5 | -28.2 | 49.0 | 0.272 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 49.0 | 0.272 | H | -66.7 | -38.6 | 49.0 | 0.272 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:478 | A:478 | 46.0 | 0.256 | H | -68.3 | -35.1 | 46.0 | 0.256 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:478 | A:478 | 48.0 | 0.267 | H | -67.5 | -36.8 | 48.0 | 0.267 | 0.0 |
HOH |
7.445 |
N |
O |
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| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:478 | A:478 | 48.0 | 0.267 | H | -65.8 | -36.4 | 48.0 | 0.267 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:477 | A:477 | 53.0 | 0.294 | H | -59.4 | -39.1 | 53.0 | 0.294 | 0.0 |
HOH |
3.003 |
NE2 |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:477 | A:477 | 53.0 | 0.294 | H | -63.0 | -36.0 | 53.0 | 0.294 | 0.0 |
HOH |
4.018 |
NE2 |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:477 | A:477 | 53.0 | 0.294 | H | -61.2 | -35.7 | 53.0 | 0.294 | 0.0 |
UNL UNL UNL UNL UNL HOH |
7.224 6.429 3.835 7.157 8.968 2.966 |
NE2 NE2 CB N OE1 NE2 |
O O O O N3 O |
||
| GLN | E:477 | N:477 | 52.0 | 0.289 | H | -57.4 | -39.1 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:477 | A:477 | 56.0 | 0.311 | H | -61.6 | -39.5 | 56.0 | 0.311 | 0.0 |
AZI HOH |
8.346 2.910 |
OE1 O |
N3 O |
||
| GLN | E:477 | N:477 | 54.0 | 0.3 | H | -61.3 | -39.3 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:477 | A:477 | 55.0 | 0.306 | H | -61.3 | -16.2 | 55.0 | 0.306 | 0.0 |
HOH |
4.973 |
O |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLN | A:477 | A:477 | 55.0 | 0.306 | H | -64.2 | -40.7 | 55.0 | 0.306 | 0.0 |
HOH |
2.908 |
O |
O |
||
| GLN | E:477 | N:477 | 53.0 | 0.294 | H | -63.0 | -41.2 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 52.0 | 0.289 | H | -67.4 | -37.0 | 52.0 | 0.289 | 0.0 |
UNL UNL HOH |
9.657 7.070 3.216 |
OE1 OE1 NE2 |
O1 O O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 63.0 | 0.35 | H | -66.9 | -36.2 | 63.0 | 0.35 | 0.0 |
UNL HOH |
7.779 3.138 |
OE1 NE2 |
O09 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 54.0 | 0.3 | H | -61.9 | -44.1 | 54.0 | 0.3 | 0.0 |
PEG UNL UNL HOH |
9.932 9.316 7.515 4.091 |
OE1 OE1 OE1 NE2 |
C2 O1 C1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLN | A:477 | A:477 | 52.0 | 0.289 | H | -71.7 | -32.4 | 52.0 | 0.289 | 0.0 |
PEG UNL |
9.738 8.270 |
OE1 OE1 |
C2 O2 |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 53.0 | 0.294 | H | -69.9 | -32.8 | 53.0 | 0.294 | 0.0 |
UNL HOH |
8.634 9.722 |
OE1 O |
N3 O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 60.0 | 0.333 | H | -67.7 | -33.0 | 60.0 | 0.333 | 0.0 |
UNL UNL HOH |
9.485 7.380 3.690 |
OE1 OE1 NE2 |
O1 C1 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:477 | A:477 | 53.0 | 0.294 | H | -60.5 | -41.0 | 53.0 | 0.294 | 0.0 |
UNL UNL HOH |
9.383 7.271 4.098 |
OE1 OE1 NE2 |
O1 C1 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLN | A:520 | A:520 | 44.0 | 0.244 | H | -59.1 | -39.9 | |