Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 251203 | . | A | C | CCDS3853.1:NM_004168.2:c.1648Aag>Cag_NP_004159.2:p.550K>Q | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | LYS | A:518 | A:550 | 46.0 | 0.23 | E | -141.9 | 112.2 | 46.0 | 0.23 | 0.0 |
HOH |
7.891 |
CA |
O |
||
| LYS | C:518 | C:550 | 12.0 | NA | E | -134.7 | 123.7 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | LYS | A:550 | A:508 | 55.0 | 0.275 | E | -78.3 | 123.5 | 55.0 | 0.275 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | LYS | A:550 | A:508 | 50.0 | 0.25 | E | -115.4 | 114.3 | 50.0 | 0.25 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | LYS | A:508 | A:508 | 46.0 | 0.23 | E | -113.2 | 132.0 | 46.0 | 0.23 | 0.0 |
HOH |
4.402 |
N |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | LYS | A:508 | A:508 | 49.0 | 0.245 | E | -112.2 | 132.8 | 49.0 | 0.245 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 35.0 | 0.175 | E | -100.9 | 129.7 | 35.0 | 0.175 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 39.0 | 0.195 | E | -106.5 | 132.3 | 39.0 | 0.195 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 47.0 | 0.235 | E | -103.3 | 127.1 | 47.0 | 0.235 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 45.0 | 0.225 | E | -105.7 | 127.8 | 45.0 | 0.225 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 49.0 | 0.245 | E | -116.1 | 131.5 | 49.0 | 0.245 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 54.0 | 0.27 | E | -115.9 | 123.0 | 54.0 | 0.27 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 51.0 | 0.255 | E | -104.3 | 127.5 | 51.0 | 0.255 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 47.0 | 0.235 | E | -115.3 | 131.9 | 47.0 | 0.235 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 39.0 | 0.195 | E | -113.2 | 124.1 | 39.0 | 0.195 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 51.0 | 0.255 | E | -114.7 | 131.7 | 51.0 | 0.255 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 54.0 | 0.27 | E | -112.9 | 126.7 | 54.0 | 0.27 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 56.0 | 0.28 | E | -110.9 | 132.1 | 56.0 | 0.28 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 47.0 | 0.235 | E | -105.6 | 117.2 | 47.0 | 0.235 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 63.0 | 0.315 | -104.9 | 115.5 | 63.0 | 0.315 | 0.0 | |||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 32.0 | 0.16 | E | -111.6 | 126.1 | 32.0 | 0.16 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 44.0 | 0.22 | E | -116.9 | 126.1 | 44.0 | 0.22 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | LYS | A:508 | A:508 | 40.0 | 0.2 | E | -112.5 | 121.6 | 40.0 | 0.2 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | LYS | A:508 | A:508 | 59.0 | 0.295 | E | -98.1 | 127.5 | 59.0 | 0.295 | 0.0 |
HOH |
9.847 |
N |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | LYS | A:508 | A:508 | 48.0 | 0.24 | E | -109.4 | 113.1 | 48.0 | 0.24 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LYS | A:507 | A:507 | 55.0 | 0.275 | E | -116.5 | 125.3 | 55.0 | 0.275 | 0.0 |
HOH |
2.763 |
CE |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LYS | A:507 | A:507 | 54.0 | 0.27 | E | -126.8 | 122.4 | 54.0 | 0.27 | 0.0 |
HOH |
2.891 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | LYS | A:507 | A:507 | 35.0 | 0.175 | E | -135.7 | 121.7 | 35.0 | 0.175 | 0.0 |
UNL HOH |
8.569 3.090 |
CA O |
O O |
||
| LYS | E:507 | N:507 | 35.0 | 0.175 | E | -135.2 | 122.4 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | LYS | A:507 | A:507 | 67.0 | 0.335 | E | -130.6 | 124.9 | 67.0 | 0.335 | 0.0 |
HOH |
2.836 |
CE |
O |
||
| LYS | E:507 | N:507 | 67.0 | 0.335 | E | -131.5 | 124.7 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | LYS | A:507 | A:507 | 56.0 | 0.28 | E | -127.0 | 126.6 | 56.0 | 0.28 | 0.0 |
HOH |
2.887 |
O |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | LYS | A:507 | A:507 | 71.0 | 0.355 | E | -131.0 | 122.2 | 71.0 | 0.355 | 0.0 |
HOH |
2.599 |
CE |
O |
||
| LYS | E:507 | N:507 | 69.0 | 0.345 | E | -130.4 | 123.5 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 58.0 | 0.29 | E | -132.0 | 124.7 | 58.0 | 0.29 | 0.0 |
UNL HOH |
2.946 3.277 |
O CD |
O2 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 52.0 | 0.26 | E | -139.1 | 123.0 | 52.0 | 0.26 | 0.0 |
UNL HOH |
2.895 3.353 |
O CG |
O2 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 54.0 | 0.27 | E | -131.7 | 125.3 | 54.0 | 0.27 | 0.0 |
UNL HOH |
9.908 2.593 |
N O |
O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | LYS | A:507 | A:507 | 56.0 | 0.28 | E | -137.7 | 116.9 | 55.0 | 0.275 | 0.005 |
B:Q9YHT2:0.005 |
HOH |
6.090 |
O |
O |
|
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 54.0 | 0.27 | E | -145.7 | 113.2 | 54.0 | 0.27 | 0.0 | ||||||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 60.0 | 0.3 | E | -129.3 | 120.0 | 60.0 | 0.3 | 0.0 |
UNL HOH |
7.067 3.725 |
O O |
O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | LYS | A:507 | A:507 | 53.0 | 0.265 | E | -136.7 | 120.4 | 53.0 | 0.265 | 0.0 |
UNL HOH |
8.956 2.761 |
CB O |
O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | LYS | A:550 | A:550 | 58.0 | 0.29 | E | -129.0 | 120.6 | |