Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 251216 . G A CCDS3853.1:NM_004168.2:c.1661cGg>cAg_NP_004159.2:p.554R>Q Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:522 A:554 82.0 0.364 -96.6 -4.6 82.0 0.364 0.0 HOH
 5.134
 C
 O
ARG C:522 C:554 41.0 NA -99.5 5.1 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:554 A:512 86.0 0.382 -129.1 13.7 86.0 0.382 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:554 A:512 72.0 0.32 -128.4 20.1 72.0 0.32 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:512 A:512 67.0 0.298 -140.4 16.8 67.0 0.298 0.0 HOH
 3.329
 N
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:512 A:512 68.0 0.302 -140.9 22.8 68.0 0.302 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 80.0 0.356 -104.3 6.1 80.0 0.356 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 86.0 0.382 -106.6 12.1 86.0 0.382 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 89.0 0.396 -113.2 28.3 89.0 0.396 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 80.0 0.356 -124.4 12.7 80.0 0.356 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 89.0 0.396 -99.0 5.1 89.0 0.396 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 114.0 0.507 -113.4 40.1 113.0 0.502 0.005 B:Q007T0:0.004
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 97.0 0.431 -119.5 28.0 97.0 0.431 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 84.0 0.373 -118.5 56.4 83.0 0.369 0.004 B:Q007T0:0.004
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 84.0 0.373 -135.9 29.6 84.0 0.373 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 81.0 0.36 -110.5 4.2 81.0 0.36 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 101.0 0.449 -115.4 19.5 101.0 0.449 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 88.0 0.391 -113.8 29.1 88.0 0.391 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 81.0 0.36 -117.8 14.9 81.0 0.36 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 75.0 0.333 -126.4 39.2 75.0 0.333 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 81.0 0.36 -119.0 14.4 81.0 0.36 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 82.0 0.364 -108.2 -6.6 82.0 0.364 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:512 A:512 87.0 0.387 -123.4 39.4 87.0 0.387 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:512 A:512 75.0 0.333 -122.2 25.5 75.0 0.333 0.0 HOH
 8.971
 C
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:512 A:512 82.0 0.364 -135.9 26.8 82.0 0.364 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:511 A:511 80.0 0.356 -103.8 6.3 80.0 0.356 0.0 UNL
HOH
 3.945
2.739
 CG
N
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:511 A:511 74.0 0.329 -110.6 6.3 74.0 0.329 0.0 HOH
 2.868
 NH2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:511 A:511 78.0 0.347 -101.3 4.7 78.0 0.347 0.0 UNL
HOH
 9.103
2.869
 NH2
N
 O
O
ARG E:511 N:511 78.0 0.347 -98.9 6.5 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:511 A:511 86.0 0.382 -102.6 7.1 86.0 0.382 0.0 HOH
 3.003
 N
 O
ARG E:511 N:511 84.0 0.373 -102.3 7.7 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:511 A:511 81.0 0.36 -99.8 9.4 81.0 0.36 0.0 UNL
HOH
 4.695
3.401
 C
N
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:511 A:511 83.0 0.369 -104.0 2.3 83.0 0.369 0.0 UNL
HOH
 6.401
2.992
 O
N
 C2
O
ARG E:511 N:511 81.0 0.36 -103.1 2.2 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 77.0 0.342 -94.5 7.9 77.0 0.342 0.0 UNL
HOH
 7.627
3.318
 NH1
NH2
 O2
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 85.0 0.378 -94.4 -3.1 85.0 0.378 0.0 UNL
HOH
 7.783
2.859
 NH1
NH2
 O2
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 77.0 0.342 -92.2 -0.4 77.0 0.342 0.0 HOH
 2.977
 NH2
 O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:511 A:511 80.0 0.356 -95.1 -2.6 80.0 0.356 0.0 UNL
HOH
 5.284
6.218
 O
N
 O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 88.0 0.391 -84.9 6.7 88.0 0.391 0.0 HOH
 5.491
 C
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 85.0 0.378 -88.6 7.6 85.0 0.378 0.0 HOH
 8.445
 NH1
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:511 A:511 77.0 0.342 -93.9 3.5 77.0 0.342 0.0 HOH
 2.549
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:554 A:554 77.0 0.342 -103.1 2.2