Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 251453 . G A CCDS3853.1:NM_004168.2:c.1664gGa>gAa_NP_004159.2:p.555G>E Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLY A:523 A:555 32.0 0.427 S -86.7 -166.1 32.0 0.427 0.0 HOH
 3.377
 C
 O
GLY C:523 C:555 31.0 0.413 S -86.7 -165.2 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLY A:555 A:513 31.0 0.413 -78.6 167.4 6.0 0.08 0.333 B:Q007T0:0.333
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLY A:555 A:513 31.0 0.413 -90.0 177.8 6.0 0.08 0.333 B:Q007T0:0.333
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLY A:513 A:513 34.0 0.453 -83.9 178.2 10.0 0.133 0.32 B:Q007T0:0.32
 HOH
 3.497
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLY A:513 A:513 33.0 0.44 -86.7 178.4 9.0 0.12 0.32 B:None:0.32
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 33.0 0.44 -74.5 174.4 7.0 0.093 0.347 B:Q007T0:0.347
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 28.0 0.373 -83.9 164.7 6.0 0.08 0.293 B:Q007T0:0.293
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 27.0 0.36 -99.9 179.9 6.0 0.08 0.28 B:Q007T0:0.28
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 31.0 0.413 -81.5 173.9 9.0 0.12 0.293 B:Q007T0:0.293
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 29.0 0.387 -83.5 157.3 9.0 0.12 0.267 B:Q007T0:0.267
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 23.0 0.307 -118.0 174.2 1.0 0.013 0.294 B:Q007T0:0.293
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 26.0 0.347 -106.8 149.7 2.0 0.027 0.32 B:Q007T0:0.32
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 22.0 0.293 -118.7 175.2 2.0 0.027 0.266 B:Q007T0:0.267
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 30.0 0.4 -97.2 179.0 5.0 0.067 0.333 B:Q007T0:0.333
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 28.0 0.373 -71.2 153.4 5.0 0.067 0.306 B:Q007T0:0.307
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 27.0 0.36 -92.1 160.9 5.0 0.067 0.293 B:Q007T0:0.293
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 27.0 0.36 -97.3 168.6 5.0 0.067 0.293 B:Q007T0:0.293
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 27.0 0.36 -86.8 156.4 4.0 0.053 0.307 B:Q007T0:0.307
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 27.0 0.36 -98.4 -178.6 7.0 0.093 0.267 B:Q007T0:0.267
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 29.0 0.387 -85.7 165.6 5.0 0.067 0.32 B:Q007T0:0.32
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 30.0 0.4 -76.3 162.9 6.0 0.08 0.32 B:Q007T0:0.32
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:513 A:513 28.0 0.373 -96.6 -170.6 6.0 0.08 0.293 B:Q007T0:0.293
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:513 A:513 28.0 0.373 -92.3 161.8 6.0 0.08 0.293 B:Q007T0:0.293
 HOH
 5.485
 O
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:513 A:513 29.0 0.387 -97.2 169.4 5.0 0.067 0.32 B:Q007T0:0.32
 HOH
 9.328
 C
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLY A:512 A:512 31.0 0.413 -75.0 -174.9 7.0 0.093 0.32 B:Q9YHT2:0.32
 UNL
HOH
 6.588
3.406
 N
CA
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLY A:512 A:512 30.0 0.4 -85.7 -174.9 6.0 0.08 0.32 B:3851612:0.32
 HOH
 3.013
 CA
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLY A:512 A:512 28.0 0.373 -77.3 179.9 6.0 0.08 0.293 B:Q9YHT2:0.293
 HOH
 3.637
 CA
 O
GLY E:512 N:512 28.0 0.373 -79.0 -179.6 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:512 A:512 29.0 0.387 -80.2 -175.2 6.0 0.08 0.307 B:Q9YHT2:0.307
 HOH
 3.416
 CA
 O
GLY E:512 N:512 30.0 0.4 -80.5 -176.1 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:512 A:512 28.0 0.373 -87.6 177.6 8.0 0.107 0.266 B:Q9YHT2:0.267
 UNL
HOH
 4.475
3.794
 N
CA
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLY A:512 A:512 29.0 0.387 -76.1 177.7 7.0 0.093 0.294 B:Q9YHT2:0.293
 UNL
HOH
 6.119
3.691
 CA
CA
 C2
O
GLY E:512 N:512 29.0 0.387 -76.2 179.2 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 29.0 0.387 -76.5 176.4 8.0 0.107 0.28 B:Q9YHT2:0.28
 HOH
 3.543
 CA
 O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 30.0 0.4 -71.1 175.3 7.0 0.093 0.307 B:Q9YHT2:0.307
 HOH
 3.618
 CA
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 31.0 0.413 -67.9 -174.3 7.0 0.093 0.32 B:Q9YHT2:0.32
 HOH
 3.552
 CA
 O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLY A:512 A:512 30.0 0.4 -71.1 177.4 6.0 0.08 0.32 B:Q9YHT2:0.32
 UNL
HOH
 5.442
6.065
 C
N
 O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 28.0 0.373 -87.9 176.2 5.0 0.067 0.306 B:Q9YHT2:0.307
 HOH
 3.324
 CA
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 27.0 0.36 -78.7 -177.0 5.0 0.067 0.293 B:Q9YHT2:0.293
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:512 A:512 30.0 0.4 -70.7 -169.6 6.0 0.08 0.32 B:Q9YHT2:0.32
 HOH
 3.633
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLY A:555 A:555 29.0 0.387 -68.4 179.1