Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 251518 | . | C | A | CCDS3853.1:NM_004168.2:c.1729Cag>Aag_NP_004159.2:p.577Q>K | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLN | A:545 | A:577 | 0.0 | 0.0 | H | -69.8 | -31.2 | 0.0 | 0.0 | 0.0 |
EDO HOH |
9.999 2.615 |
OE1 O |
C1 O |
||
| GLN | C:545 | C:577 | 0.0 | 0.0 | H | -70.5 | -33.1 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLN | A:577 | A:535 | 0.0 | 0.0 | H | -64.6 | -28.5 | 0.0 | 0.0 | 0.0 |
HOH |
5.880 |
OE1 |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLN | A:577 | A:535 | 0.0 | 0.0 | H | -67.9 | -34.1 | 0.0 | 0.0 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -72.5 | -32.8 | 0.0 | 0.0 | 0.0 |
HOH |
2.960 |
OE1 |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -75.7 | -27.7 | 0.0 | 0.0 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -71.4 | -31.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -73.7 | -27.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -69.9 | -34.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -76.2 | -31.9 | 1.0 | 0.006 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -67.3 | -37.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -73.9 | -31.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -73.8 | -24.7 | 1.0 | 0.006 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -75.0 | -22.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -74.7 | -23.9 | 1.0 | 0.006 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -71.2 | -24.6 | 0.0 | 0.0 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -72.4 | -30.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -69.8 | -31.8 | 1.0 | 0.006 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -74.1 | -26.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -71.2 | -30.1 | 1.0 | 0.006 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -77.7 | -28.7 | 0.0 | 0.0 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -69.9 | -40.4 | 1.0 | 0.006 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -93.5 | -18.6 | 0.0 | 0.0 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:535 | A:535 | 0.0 | 0.0 | H | -70.0 | -36.2 | 0.0 | 0.0 | 0.0 |
HOH |
4.986 |
O |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:535 | A:535 | 1.0 | 0.006 | H | -76.4 | -33.9 | 1.0 | 0.006 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:534 | A:534 | 0.0 | 0.0 | H | -59.2 | -32.1 | 0.0 | 0.0 | 0.0 |
HOH |
2.705 |
NE2 |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -53.9 | -31.8 | 1.0 | 0.006 | 0.0 |
HOH |
2.987 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -68.7 | -36.2 | 1.0 | 0.006 | 0.0 |
HOH |
2.774 |
NE2 |
O |
||
| GLN | E:534 | N:534 | 1.0 | 0.006 | H | -68.5 | -36.4 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -63.7 | -37.9 | 1.0 | 0.006 | 0.0 |
HOH |
2.896 |
NE2 |
O |
||
| GLN | E:534 | N:534 | 1.0 | 0.006 | H | -62.9 | -38.9 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -58.2 | -31.2 | 1.0 | 0.006 | 0.0 |
HOH |
2.961 |
NE2 |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -61.7 | -39.3 | 1.0 | 0.006 | 0.0 |
HOH |
2.876 |
O |
O |
||
| GLN | E:534 | N:534 | 1.0 | 0.006 | H | -61.4 | -39.5 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -64.4 | -35.7 | 1.0 | 0.006 | 0.0 |
HOH |
2.693 |
OE1 |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -66.2 | -31.2 | 1.0 | 0.006 | 0.0 |
UNL HOH |
2.382 2.946 |
O OE1 |
O O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 0.0 | 0.0 | H | -65.8 | -34.7 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.694 2.652 |
OE1 O |
O1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLN | A:534 | A:534 | 0.0 | 0.0 | H | -57.2 | -34.7 | 0.0 | 0.0 | 0.0 |
HOH |
2.451 |
O |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 0.0 | 0.0 | H | -63.9 | -27.9 | 0.0 | 0.0 | 0.0 |
HOH |
9.859 |
NE2 |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 0.0 | 0.0 | H | -69.1 | -27.7 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.762 3.131 |
N OE1 |
O2 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:534 | A:534 | 1.0 | 0.006 | H | -76.5 | -38.3 | 1.0 | 0.006 | 0.0 |
UNL UNL HOH |
8.764 9.788 2.903 |
N OE1 O |
O3 O1 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLN | A:577 | A:577 | 1.0 | 0.006 | H | -63.3 | -41.0 | |