Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 251530 | . | G | A | CCDS3853.1:NM_004168.2:c.1741Gga>Aga_NP_004159.2:p.581G>R | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLY | A:549 | A:581 | 0.0 | 0.0 | H | -67.7 | -32.5 | 0.0 | 0.0 | 0.0 |
EDO HOH |
8.726 3.179 |
N O |
C2 O |
||
| GLY | C:549 | C:581 | 0.0 | 0.0 | H | -67.1 | -30.6 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLY | A:581 | A:539 | 0.0 | 0.0 | H | -46.8 | -47.0 | 0.0 | 0.0 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLY | A:581 | A:539 | 0.0 | 0.0 | H | -66.8 | -41.6 | 0.0 | 0.0 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -57.2 | -29.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.305 |
CA |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -59.6 | -26.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -61.1 | -35.7 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -62.1 | -36.6 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -56.1 | -36.5 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -68.0 | -30.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -62.1 | -36.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -65.3 | -36.1 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -64.3 | -28.7 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -72.8 | -26.9 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -69.1 | -27.0 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -68.1 | -30.6 | 1.0 | 0.013 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -64.4 | -35.6 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -63.7 | -35.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -67.8 | -31.3 | 1.0 | 0.013 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -63.3 | -35.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -61.2 | -37.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -56.7 | -43.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:539 | A:539 | 2.0 | 0.027 | H | -71.6 | -30.4 | 2.0 | 0.027 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:539 | A:539 | 0.0 | 0.0 | H | -65.7 | -41.9 | 0.0 | 0.0 | 0.0 |
HOH |
5.571 |
CA |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:539 | A:539 | 1.0 | 0.013 | H | -62.1 | -39.8 | 1.0 | 0.013 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -64.4 | -37.6 | 0.0 | 0.0 | 0.0 |
UNL HOH |
8.603 3.461 |
N CA |
O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -64.3 | -35.2 | 0.0 | 0.0 | 0.0 |
HOH |
3.597 |
CA |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -64.0 | -40.2 | 0.0 | 0.0 | 0.0 |
UNL HOH |
8.350 2.902 |
N O |
O1 O |
||
| GLY | E:538 | N:538 | 0.0 | 0.0 | H | -61.5 | -40.4 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:538 | A:538 | 1.0 | 0.013 | H | -61.2 | -40.5 | 1.0 | 0.013 | 0.0 |
HOH |
2.987 |
O |
O |
||
| GLY | E:538 | N:538 | 0.0 | 0.0 | H | -63.0 | -38.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -69.4 | -36.4 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.075 5.742 |
N N |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLY | A:538 | A:538 | 1.0 | 0.013 | H | -59.5 | -43.0 | 1.0 | 0.013 | 0.0 |
HOH |
2.884 |
O |
O |
||
| GLY | E:538 | N:538 | 0.0 | 0.0 | H | -58.9 | -43.4 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -59.8 | -37.4 | 0.0 | 0.0 | 0.0 |
HOH |
2.964 |
O |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -65.6 | -33.2 | 0.0 | 0.0 | 0.0 |
UNL HOH |
4.094 2.973 |
CA O |
O O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -67.4 | -35.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.016 |
O |
O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -65.6 | -27.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.392 |
CA |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -67.9 | -31.5 | 0.0 | 0.0 | 0.0 | ||||||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -66.6 | -27.1 | 0.0 | 0.0 | 0.0 |
HOH |
4.674 |
N |
O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:538 | A:538 | 0.0 | 0.0 | H | -55.6 | -47.7 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.930 3.258 |
O O |
O2 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLY | A:581 | A:581 | 1.0 | 0.013 | H | -59.2 | -41.9 | |