Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 254511 . C A CCDS3853.1:NM_004168.2:c.1798Cgg>Agg_NP_004159.2:p.600R>R Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:568 A:600 30.0 0.133 -73.9 123.0 30.0 0.133 0.0 EDO
EDO
HOH
 3.461
3.077
3.992
 CB
O
CB
 O1
O1
O
ARG C:568 C:600 27.0 0.12 -74.6 115.5 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:600 A:558 52.0 0.231 -85.8 118.1 52.0 0.231 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:600 A:558 55.0 0.244 -82.6 104.6 55.0 0.244 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:558 A:558 43.0 0.191 -101.9 82.5 43.0 0.191 0.0 HOH
 2.843
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:558 A:558 38.0 0.169 -104.4 83.1 38.0 0.169 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 61.0 0.271 -91.6 109.6 61.0 0.271 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 52.0 0.231 -100.2 99.8 52.0 0.231 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 55.0 0.244 -83.7 104.9 55.0 0.244 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 54.0 0.24 -98.9 108.4 54.0 0.24 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 59.0 0.262 -79.2 106.1 59.0 0.262 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 62.0 0.276 -82.3 94.1 62.0 0.276 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 58.0 0.258 -92.6 84.7 58.0 0.258 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 57.0 0.253 -88.7 95.0 57.0 0.253 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 56.0 0.249 -101.8 95.5 56.0 0.249 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 61.0 0.271 -96.6 102.4 61.0 0.271 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 49.0 0.218 -94.0 103.8 49.0 0.218 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 55.0 0.244 -98.0 108.0 55.0 0.244 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 60.0 0.267 -83.7 115.5 60.0 0.267 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 50.0 0.222 -86.0 97.6 50.0 0.222 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 56.0 0.249 -103.5 101.9 56.0 0.249 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 57.0 0.253 -83.3 112.1 57.0 0.253 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:558 A:558 53.0 0.236 -90.5 90.0 53.0 0.236 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:558 A:558 46.0 0.204 -76.8 109.4 46.0 0.204 0.0 HOH
 3.765
 O
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:558 A:558 55.0 0.244 -68.3 112.6 55.0 0.244 0.0 HOH
 2.939
 O
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:557 A:557 51.0 0.227 -89.7 127.7 51.0 0.227 0.0 HOH
 2.995
 N
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:557 A:557 49.0 0.218 -91.2 132.5 49.0 0.218 0.0 HOH
 2.816
 N
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:557 A:557 51.0 0.227 -73.2 128.8 51.0 0.227 0.0 AZI
UNL
HOH
 3.114
8.921
2.871
 O
NH2
N
 N1
O
O
ARG E:557 N:557 52.0 0.231 -73.9 128.3 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:557 A:557 52.0 0.231 -80.7 133.0 52.0 0.231 0.0 HOH
 3.011
 N
 O
ARG E:557 N:557 53.0 0.236 -80.7 133.2 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:557 A:557 51.0 0.227 -95.3 110.6 51.0 0.227 0.0 HOH
 2.744
 O
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:557 A:557 52.0 0.231 -80.7 128.1 52.0 0.231 0.0 UNL
HOH
 9.800
2.822
 NH2
O
 C2
O
ARG E:557 N:557 52.0 0.231 -81.7 128.1 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 55.0 0.244 -81.7 130.5 55.0 0.244 0.0 UNL
UNL
HOH
 2.999
3.417
3.420
 O
NH1
O
 O2
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 60.0 0.267 -89.2 125.0 60.0 0.267 0.0 UNL
UNL
HOH
 2.830
3.890
4.463
 O
NH1
CB
 O3
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 52.0 0.231 -78.6 131.1 52.0 0.231 0.0 UNL
HOH
 2.964
3.451
 O
O
 C2
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:557 A:557 55.0 0.244 -89.8 124.9 55.0 0.244 0.0 UNL
HOH
 3.812
4.208
 NH2
N
 O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 57.0 0.253 -103.4 123.7 57.0 0.253 0.0 UNL
 2.887
 O
 O1
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 56.0 0.249 -90.2 123.8 56.0 0.249 0.0 UNL
UNL
HOH
 8.864
3.344
3.298
 C
O
CD
 O1
C2
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:557 A:557 55.0 0.244 -77.1 131.0 55.0 0.244 0.0 UNL
UNL
HOH
 9.991
3.076
3.412
 C
O
O
 O1
C2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:600 A:600 46.0 0.204 -75.5 127.7