Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 254525 | . | C | A | CCDS3853.1:NM_004168.2:c.1812taC>taA_NP_004159.2:p.604Y>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | TYR | A:572 | A:604 | 60.0 | 0.261 | S | -120.7 | 166.2 | 60.0 | 0.261 | 0.0 |
MLI EDO HOH |
6.108 3.048 9.193 |
CE2 O O |
O7 O1 O |
||
| TYR | C:572 | C:604 | 52.0 | 0.226 | S | -122.3 | 173.4 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | TYR | A:604 | A:562 | 50.0 | 0.217 | S | -113.1 | 155.9 | 50.0 | 0.217 | 0.0 |
HOH |
8.747 |
CE1 |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | TYR | A:604 | A:562 | 48.0 | 0.209 | S | -132.1 | -160.4 | 48.0 | 0.209 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:562 | A:562 | 50.0 | 0.217 | S | -126.1 | -177.2 | 50.0 | 0.217 | 0.0 |
HOH |
3.010 |
O |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:562 | A:562 | 52.0 | 0.226 | S | -123.2 | -176.1 | 52.0 | 0.226 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 45.0 | 0.196 | S | -123.8 | 163.8 | 45.0 | 0.196 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 44.0 | 0.191 | S | -116.2 | 162.2 | 44.0 | 0.191 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 48.0 | 0.209 | S | -119.9 | 160.9 | 48.0 | 0.209 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 48.0 | 0.209 | S | -116.6 | 164.7 | 48.0 | 0.209 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 34.0 | 0.148 | S | -127.7 | 169.2 | 34.0 | 0.148 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 41.0 | 0.178 | S | -128.6 | 175.5 | 41.0 | 0.178 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 44.0 | 0.191 | S | -113.8 | 159.9 | 44.0 | 0.191 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 43.0 | 0.187 | S | -125.4 | 165.7 | 43.0 | 0.187 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 47.0 | 0.204 | S | -122.7 | 164.4 | 47.0 | 0.204 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 44.0 | 0.191 | S | -102.6 | 162.4 | 44.0 | 0.191 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 50.0 | 0.217 | S | -128.0 | 164.6 | 50.0 | 0.217 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 49.0 | 0.213 | S | -124.9 | 169.3 | 49.0 | 0.213 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 41.0 | 0.178 | S | -125.1 | 159.5 | 41.0 | 0.178 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 41.0 | 0.178 | S | -138.2 | 165.1 | 41.0 | 0.178 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 41.0 | 0.178 | S | -113.1 | 179.4 | 41.0 | 0.178 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 42.0 | 0.183 | S | -114.9 | 164.1 | 42.0 | 0.183 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:562 | A:562 | 38.0 | 0.165 | S | -134.1 | 156.9 | 38.0 | 0.165 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:562 | A:562 | 43.0 | 0.187 | S | -122.1 | -173.0 | 43.0 | 0.187 | 0.0 |
HOH |
4.238 |
O |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:562 | A:562 | 43.0 | 0.187 | S | -130.9 | -170.6 | 43.0 | 0.187 | 0.0 |
HOH |
2.656 |
O |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PHE | A:561 | A:561 | 32.0 | 0.152 | S | -139.7 | 167.1 | 32.0 | 0.152 | 0.0 |
HOH |
2.238 |
N |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PHE | A:561 | A:561 | 33.0 | 0.157 | S | -137.9 | 160.4 | 33.0 | 0.157 | 0.0 |
HOH |
3.200 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PHE | A:561 | A:561 | 39.0 | 0.186 | S | -121.4 | 176.1 | 39.0 | 0.186 | 0.0 |
AZI UNL UNL HOH |
4.015 6.937 7.136 2.668 |
O CE2 CB O |
N3 S2 O O |
||
| PHE | E:561 | N:561 | 41.0 | 0.195 | S | -121.8 | 175.2 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | PHE | A:561 | A:561 | 39.0 | 0.186 | S | -136.0 | 164.7 | 39.0 | 0.186 | 0.0 |
HOH |
3.118 |
O |
O |
||
| PHE | E:561 | N:561 | 39.0 | 0.186 | S | -137.6 | 163.1 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | PHE | A:561 | A:561 | 36.0 | 0.171 | S | -137.2 | 161.5 | 36.0 | 0.171 | 0.0 |
HOH |
2.374 |
N |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | PHE | A:561 | A:561 | 39.0 | 0.186 | S | -137.7 | 169.2 | 39.0 | 0.186 | 0.0 |
UNL HOH |
6.967 2.884 |
CD1 O |
C2 O |
||
| PHE | E:561 | N:561 | 39.0 | 0.186 | S | -136.6 | 169.8 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 35.0 | 0.167 | S | -130.5 | 165.4 | 35.0 | 0.167 | 0.0 |
UNL UNL HOH |
3.755 6.327 2.875 |
O CE2 O |
O2 O1 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 38.0 | 0.181 | S | -133.2 | 158.4 | 38.0 | 0.181 | 0.0 |
UNL UNL HOH |
3.193 6.532 4.937 |
O CE2 CE2 |
O1 O1 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 35.0 | 0.167 | S | -128.7 | 165.9 | 35.0 | 0.167 | 0.0 |
UNL UNL UNL HOH |
7.076 3.879 7.451 2.818 |
CE2 O N O |
O1 O O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | PHE | A:561 | A:561 | 38.0 | 0.181 | S | -129.0 | 171.4 | 38.0 | 0.181 | 0.0 |
UNL UNL |
4.945 6.782 |
O CE2 |
O O1 |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 40.0 | 0.19 | S | -119.8 | -166.7 | 40.0 | 0.19 | 0.0 |
UNL UNL |
3.469 7.054 |
O CE2 |
O2 O1 |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 39.0 | 0.186 | S | -123.6 | 161.4 | 39.0 | 0.186 | 0.0 |
UNL UNL HOH |
7.930 3.272 5.741 |
CE2 O CE2 |
O1 O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PHE | A:561 | A:561 | 37.0 | 0.176 | S | -127.2 | 166.0 | 37.0 | 0.176 | 0.0 |
UNL UNL UNL HOH |
7.031 3.668 7.829 2.732 |
CE2 O N O |
O1 O O O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | TYR | A:604 | A:604 | 63.0 | 0.274 | S | -130.5 | 161.7 | |