Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 254559 . A C CCDS3853.1:NM_004168.2:c.1846Aag>Cag_NP_004159.2:p.616K>Q Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 LYS A:584 A:616 76.0 0.38 -65.9 141.4 76.0 0.38 0.0 MLI
EDO
HOH
 5.520
3.470
9.982
 O
CD
O
 O6
O2
O
LYS C:584 C:616 72.0 0.36 -70.4 150.7 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 LYS A:616 A:574 68.0 0.34 -81.7 142.1 68.0 0.34 0.0 HOH
 8.816
 O
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 LYS A:616 A:574 69.0 0.345 -79.5 141.2 69.0 0.345 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 LYS A:574 A:574 63.0 0.315 -70.1 147.3 63.0 0.315 0.0 HOH
 2.744
 NZ
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 LYS A:574 A:574 68.0 0.34 -72.6 148.9 68.0 0.34 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 71.0 0.355 -82.0 135.5 71.0 0.355 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 72.0 0.36 -91.0 132.9 72.0 0.36 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 69.0 0.345 -73.1 135.5 69.0 0.345 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 72.0 0.36 -67.7 140.0 72.0 0.36 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 71.0 0.355 -86.8 145.9 71.0 0.355 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 79.0 0.395 -81.9 150.4 79.0 0.395 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 103.0 0.515 -92.4 140.6 103.0 0.515 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 104.0 0.52 -94.1 147.4 104.0 0.52 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 78.0 0.39 -75.3 139.7 78.0 0.39 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 87.0 0.435 -74.3 146.0 87.0 0.435 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 68.0 0.34 -73.2 138.9 68.0 0.34 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 90.0 0.45 -72.0 139.4 90.0 0.45 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 81.0 0.405 -69.9 136.1 81.0 0.405 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 76.0 0.38 -77.5 137.8 76.0 0.38 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 83.0 0.415 -84.5 142.9 83.0 0.415 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 69.0 0.345 -74.2 136.9 69.0 0.345 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 LYS A:574 A:574 63.0 0.315 -75.7 136.3 63.0 0.315 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 LYS A:574 A:574 75.0 0.375 -76.3 146.0 75.0 0.375 0.0 HOH
 7.112
 NZ
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 LYS A:574 A:574 83.0 0.415 -63.9 142.5 83.0 0.415 0.0 HOH
 5.030
 NZ
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:573 A:573 90.0 0.4 -83.2 151.3 90.0 0.4 0.0 HOH
 2.458
 NH2
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:573 A:573 97.0 0.431 -74.5 149.5 97.0 0.431 0.0 HOH
 3.340
 NH1
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:573 A:573 92.0 0.409 -74.2 135.1 92.0 0.409 0.0 AZI
UNL
UNL
HOH
 6.150
6.124
9.473
2.884
 NH1
O
CD
NH1
 N3
S2
O
O
ARG E:573 N:573 89.0 0.396 -74.5 134.0 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:573 A:573 84.0 0.373 -74.7 137.7 84.0 0.373 0.0 HOH
 2.711
 NH2
 O
ARG E:573 N:573 82.0 0.364 -73.7 138.1 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:573 A:573 82.0 0.364 -66.0 156.6 82.0 0.364 0.0 HOH
 3.436
 NH2
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:573 A:573 87.0 0.387 -81.2 138.6 87.0 0.387 0.0 HOH
 2.833
 CD
 O
ARG E:573 N:573 89.0 0.396 -81.3 138.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 91.0 0.404 -71.8 137.1 91.0 0.404 0.0 UNL
UNL
HOH
 4.516
5.846
2.502
 NH1
O
NH1
 O2
O1
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 90.0 0.4 -76.0 135.8 90.0 0.4 0.0 UNL
UNL
HOH
 4.355
6.122
4.617
 NH1
O
O
 O3
O1
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 89.0 0.396 -89.6 140.2 89.0 0.396 0.0 UNL
UNL
UNL
HOH
 5.813
5.943
4.094
2.787
 O
NH1
O
NH1
 O1
O
O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:573 A:573 91.0 0.404 -74.5 134.7 91.0 0.404 0.0 UNL
UNL
HOH
 7.044
5.862
8.235
 NH1
O
NH2
 O
O1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 87.0 0.387 -72.5 133.7 87.0 0.387 0.0 UNL
UNL
 4.498
5.828
 NH1
O
 O2
O1
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 85.0 0.378 -69.8 137.6 85.0 0.378 0.0 UNL
UNL
UNL
HOH
 7.076
6.901
5.032
5.877
 O
CD
NH1
O
 C1
O1
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:573 A:573 87.0 0.387 -78.3 138.9 87.0 0.387 0.0 UNL
UNL
UNL
UNL
UNL
HOH
 5.766
7.342
5.595
4.306
9.687
2.925
 O
CD
NH1
O
O
NH1
 O1
O1
O
O
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 LYS A:616 A:616 79.0 0.395 -66.4 140.2