Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 254604 . G A CCDS3853.1:NM_004168.2:c.1891Gac>Aac_NP_004159.2:p.631D>N Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ASP A:599 A:631 92.0 0.613 -73.5 104.7 92.0 0.613 0.0 EDO
HOH
 7.191
3.555
 N
N
 C1
O
ASP C:599 C:631 90.0 0.6 -70.7 108.0 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ASP A:631 A:589 88.0 0.587 E -72.5 119.2 88.0 0.587 0.0 HOH
 4.781
 N
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ASP A:631 A:589 72.0 0.48 E -67.0 113.4 72.0 0.48 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ASP A:589 A:589 81.0 0.54 E -76.0 105.9 81.0 0.54 0.0 HOH
 3.642
 N
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ASP A:589 A:589 84.0 0.56 -73.1 103.1 84.0 0.56 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 93.0 0.62 E -65.9 111.3 93.0 0.62 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 80.0 0.533 E -69.9 111.4 80.0 0.533 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 87.0 0.58 E -64.3 107.4 87.0 0.58 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 87.0 0.58 E -69.6 105.6 87.0 0.58 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 81.0 0.54 B -76.3 108.3 81.0 0.54 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 88.0 0.587 -76.1 124.0 88.0 0.587 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 91.0 0.607 E -70.3 121.2 91.0 0.607 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 91.0 0.607 -66.3 121.8 91.0 0.607 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 84.0 0.56 -69.1 127.5 84.0 0.56 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 88.0 0.587 E -66.6 111.2 88.0 0.587 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 89.0 0.593 -70.4 119.7 89.0 0.593 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 73.0 0.487 E -68.2 113.8 73.0 0.487 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 89.0 0.593 -71.2 123.8 89.0 0.593 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 89.0 0.593 -68.6 132.1 89.0 0.593 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 96.0 0.64 B -66.8 104.1 96.0 0.64 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 86.0 0.573 E -70.3 115.6 86.0 0.573 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ASP A:589 A:589 76.0 0.507 -76.3 123.6 76.0 0.507 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ASP A:589 A:589 62.0 0.413 -68.3 121.5 62.0 0.413 0.0 HOH
 7.172
 N
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ASP A:589 A:589 88.0 0.587 E -69.9 113.8 88.0 0.587 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ASP A:588 A:588 83.0 0.553 E -90.5 111.5 83.0 0.553 0.0 HOH
 3.425
 OD2
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ASP A:588 A:588 80.0 0.533 E -81.6 108.6 80.0 0.533 0.0 HOH
 4.329
 CG
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ASP A:588 A:588 90.0 0.6 -82.2 106.2 90.0 0.6 0.0 UNL
UNL
HOH
 8.752
7.994
3.281
 C
O
N
 O
O
O
ASP E:588 N:588 74.0 0.493 -81.5 109.0 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ASP A:588 A:588 87.0 0.58 E -87.4 109.2 87.0 0.58 0.0 HOH
 3.565
 N
 O
ASP E:588 N:588 86.0 0.573 E -89.0 109.0 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ASP A:588 A:588 80.0 0.533 E -80.7 90.1 80.0 0.533 0.0 UNL
HOH
 5.870
2.964
 CA
OD2
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ASP A:588 A:588 74.0 0.493 E -89.3 106.4 74.0 0.493 0.0 UNL
UNL
HOH
 8.316
8.348
3.421
 CB
O
N
 C2
C2
O
ASP E:588 N:588 75.0 0.5 -89.0 107.4 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 91.0 0.607 E -72.3 108.7 91.0 0.607 0.0 HOH
 3.231
 N
 O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 76.0 0.507 -76.9 106.3 76.0 0.507 0.0 HOH
 3.336
 N
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 91.0 0.607 E -79.4 97.1 91.0 0.607 0.0 MOH
UNL
HOH
 8.349
7.351
3.118
 O
N
OD2
 O
O1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ASP A:588 A:588 75.0 0.5 -80.5 106.3 75.0 0.5 0.0 HOH
 5.782
 N
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 87.0 0.58 -73.8 108.6 87.0 0.58 0.0 HOH
 8.179
 C
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 95.0 0.633 E -83.7 103.8 95.0 0.633 0.0 UNL
UNL
HOH
 6.828
8.685
7.547
 O
N
N
 O1
O1
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ASP A:588 A:588 88.0 0.587 E -77.0 90.0 88.0 0.587 0.0 UNL
UNL
HOH
 6.726
7.257
3.056
 O
N
OD2
 O3
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ASP A:631 A:631 83.0 0.553 E -72.3 106.1