Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 254607 | . | G | A | CCDS3853.1:NM_004168.2:c.1894Gtt>Att_NP_004159.2:p.632V>I | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | VAL | A:600 | A:632 | 60.0 | 0.387 | T | -59.2 | -30.3 | 60.0 | 0.387 | 0.0 |
EDO HOH |
9.657 4.275 |
N CG1 |
C1 O |
||
| VAL | C:600 | C:632 | 62.0 | 0.4 | T | -60.2 | -28.3 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | VAL | A:632 | A:590 | 67.0 | 0.432 | T | -46.1 | -57.1 | 67.0 | 0.432 | 0.0 |
HOH |
4.577 |
CG1 |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | VAL | A:632 | A:590 | 71.0 | 0.458 | T | -49.4 | -42.0 | 71.0 | 0.458 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | VAL | A:590 | A:590 | 62.0 | 0.4 | T | -45.9 | -36.0 | 62.0 | 0.4 | 0.0 |
HOH |
3.019 |
CA |
O |
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| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | VAL | A:590 | A:590 | 62.0 | 0.4 | T | -42.7 | -36.2 | 62.0 | 0.4 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 57.0 | 0.368 | T | -53.5 | -35.4 | 57.0 | 0.368 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 63.0 | 0.406 | T | -53.6 | -29.9 | 63.0 | 0.406 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 55.0 | 0.355 | T | -52.8 | -28.5 | 55.0 | 0.355 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 58.0 | 0.374 | T | -52.4 | -33.4 | 58.0 | 0.374 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 54.0 | 0.348 | T | -58.0 | -31.9 | 54.0 | 0.348 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 67.0 | 0.432 | T | -68.0 | -36.0 | 67.0 | 0.432 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 58.0 | 0.374 | T | -67.7 | -33.2 | 58.0 | 0.374 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 68.0 | 0.439 | T | -60.5 | -37.7 | 68.0 | 0.439 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 56.0 | 0.361 | T | -70.4 | -33.5 | 56.0 | 0.361 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 56.0 | 0.361 | T | -63.9 | -32.2 | 56.0 | 0.361 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 62.0 | 0.4 | T | -63.6 | -35.3 | 62.0 | 0.4 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 58.0 | 0.374 | T | -60.6 | -34.4 | 58.0 | 0.374 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 62.0 | 0.4 | T | -67.7 | -31.0 | 62.0 | 0.4 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 65.0 | 0.419 | T | -69.6 | -39.6 | 65.0 | 0.419 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 52.0 | 0.335 | T | -53.8 | -32.3 | 52.0 | 0.335 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 54.0 | 0.348 | T | -71.3 | -30.2 | 54.0 | 0.348 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | VAL | A:590 | A:590 | 65.0 | 0.419 | T | -71.4 | -32.3 | 65.0 | 0.419 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | VAL | A:590 | A:590 | 65.0 | 0.419 | T | -54.9 | -39.0 | 65.0 | 0.419 | 0.0 |
HOH |
8.276 |
CG1 |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | VAL | A:590 | A:590 | 57.0 | 0.368 | T | -57.6 | -47.6 | 57.0 | 0.368 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | VAL | A:589 | A:589 | 50.0 | 0.323 | T | -64.5 | -33.7 | 50.0 | 0.323 | 0.0 |
HOH |
3.365 |
CG1 |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | VAL | A:589 | A:589 | 56.0 | 0.361 | T | -52.2 | -57.8 | 56.0 | 0.361 | 0.0 |
HOH |
3.841 |
CG2 |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | VAL | A:589 | A:589 | 50.0 | 0.323 | T | -69.6 | -27.7 | 50.0 | 0.323 | 0.0 |
UNL UNL UNL UNL HOH |
9.005 4.082 4.491 7.611 3.367 |
CG1 CG1 O CG2 N |
O O O O O |
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| VAL | E:589 | N:589 | 37.0 | 0.239 | T | -72.6 | -25.5 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | VAL | A:589 | A:589 | 54.0 | 0.348 | T | -62.7 | -27.6 | 54.0 | 0.348 | 0.0 |
HOH |
2.846 |
N |
O |
||
| VAL | E:589 | N:589 | 55.0 | 0.355 | T | -63.3 | -26.7 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | VAL | A:589 | A:589 | 52.0 | 0.335 | T | -40.1 | -62.9 | 52.0 | 0.335 | 0.0 |
UNL HOH |
5.695 4.090 |
N CG1 |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | VAL | A:589 | A:589 | 53.0 | 0.342 | T | -60.5 | -30.1 | 53.0 | 0.342 | 0.0 |
UNL UNL HOH |
9.953 5.424 3.774 |
O O N |
C2 C2 O |
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| VAL | E:589 | N:589 | 53.0 | 0.342 | T | -61.7 | -29.4 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 51.0 | 0.329 | T | -72.7 | -23.4 | 51.0 | 0.329 | 0.0 |
HOH |
5.704 |
CG1 |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 43.0 | 0.277 | T | -65.2 | -19.1 | 43.0 | 0.277 | 0.0 |
HOH |
5.823 |
N |
O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 52.0 | 0.335 | T | -58.9 | -25.1 | 52.0 | 0.335 | 0.0 |
UNL HOH |
9.839 4.250 |
N O |
O1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | VAL | A:589 | A:589 | 55.0 | 0.355 | T | -59.4 | -36.9 | 55.0 | 0.355 | 0.0 |
HOH |
6.267 |
CG2 |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 51.0 | 0.329 | T | -63.1 | -32.3 | 51.0 | 0.329 | 0.0 |
HOH |
3.679 |
CG1 |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 53.0 | 0.342 | T | -64.8 | -19.9 | 53.0 | 0.342 | 0.0 |
UNL HOH |
9.061 7.028 |
N O |
O1 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | VAL | A:589 | A:589 | 49.0 | 0.316 | T | -51.3 | -31.8 | 49.0 | 0.316 | 0.0 |
UNL UNL HOH |
8.445 9.733 4.922 |
O N CB |
O3 O1 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | VAL | A:632 | A:632 | 61.0 | 0.394 | T | -63.9 | -23.1 | |