Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 256482 | . | A | C | CCDS3853.1:NM_004168.2:c.1942Act>Cct_NP_004159.2:p.648T>P | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | THR | A:616 | A:648 | 14.0 | 0.1 | -87.7 | -177.1 | 14.0 | 0.1 | 0.0 |
HOH |
3.915 |
O |
O |
|||
| THR | C:616 | C:648 | 16.0 | 0.114 | -86.4 | -177.6 | NA | NA | NA | ||||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | THR | A:648 | A:606 | 17.0 | 0.121 | -97.2 | -174.5 | 17.0 | 0.121 | 0.0 | |||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | THR | A:648 | A:606 | 12.0 | 0.086 | -78.0 | -173.5 | 12.0 | 0.086 | 0.0 | |||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | THR | A:606 | A:606 | 13.0 | 0.093 | -97.0 | -172.1 | 13.0 | 0.093 | 0.0 |
HOH |
6.495 |
N |
O |
|||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | THR | A:606 | A:606 | 14.0 | 0.1 | -92.5 | -171.4 | 14.0 | 0.1 | 0.0 | |||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 14.0 | 0.1 | -81.5 | -168.8 | 14.0 | 0.1 | 0.0 | |||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 10.0 | 0.071 | -81.2 | -171.5 | 10.0 | 0.071 | 0.0 | |||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 11.0 | 0.079 | -76.4 | -171.8 | 11.0 | 0.079 | 0.0 | |||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 10.0 | 0.071 | -84.5 | -175.8 | 10.0 | 0.071 | 0.0 | |||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 8.0 | 0.057 | -89.3 | -177.6 | 8.0 | 0.057 | 0.0 | |||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 7.0 | 0.05 | -91.4 | -178.2 | 7.0 | 0.05 | 0.0 | |||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 6.0 | 0.043 | -87.3 | -169.9 | 6.0 | 0.043 | 0.0 | |||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 10.0 | 0.071 | -85.4 | 176.9 | 10.0 | 0.071 | 0.0 | |||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 14.0 | 0.1 | -89.8 | -179.2 | 14.0 | 0.1 | 0.0 | |||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 10.0 | 0.071 | -94.5 | -179.6 | 10.0 | 0.071 | 0.0 | |||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 7.0 | 0.05 | -94.9 | 177.5 | 7.0 | 0.05 | 0.0 | |||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 11.0 | 0.079 | -84.9 | -173.2 | 11.0 | 0.079 | 0.0 | |||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 10.0 | 0.071 | -81.6 | 177.7 | 10.0 | 0.071 | 0.0 | |||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 14.0 | 0.1 | -89.3 | -178.6 | 14.0 | 0.1 | 0.0 | |||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 7.0 | 0.05 | -92.9 | -157.1 | 7.0 | 0.05 | 0.0 | |||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 11.0 | 0.079 | -89.6 | -166.2 | 11.0 | 0.079 | 0.0 | |||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:606 | A:606 | 11.0 | 0.079 | -100.5 | -178.0 | 11.0 | 0.079 | 0.0 | |||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | THR | A:606 | A:606 | 12.0 | 0.086 | -75.6 | -173.8 | 12.0 | 0.086 | 0.0 |
HOH |
7.447 |
O |
O |
|||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | THR | A:606 | A:606 | 16.0 | 0.114 | -76.9 | -165.7 | 16.0 | 0.114 | 0.0 | |||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:605 | A:605 | 12.0 | 0.086 | -94.4 | -170.4 | 12.0 | 0.086 | 0.0 |
UNL UNL HOH |
6.891 8.609 3.277 |
N OG1 N |
O1 O1 O |
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| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:605 | A:605 | 10.0 | 0.071 | -93.1 | -168.2 | 10.0 | 0.071 | 0.0 |
HOH |
3.035 |
N |
O |
|||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:605 | A:605 | 15.0 | 0.107 | -93.4 | -172.9 | 15.0 | 0.107 | 0.0 |
UNL UNL UNL UNL UNL HOH |
7.233 9.588 9.077 9.360 7.670 3.035 |
OG1 CG2 CG2 CG2 C N |
O O O O O O |
|||
| THR | E:605 | N:605 | 14.0 | 0.1 | -93.0 | -173.9 | NA | NA | NA | ||||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | THR | A:605 | A:605 | 13.0 | 0.093 | -98.3 | -168.9 | 13.0 | 0.093 | 0.0 |
UNL HOH |
8.164 2.978 |
C O |
O1 O |
|||
| THR | E:605 | N:605 | 12.0 | 0.086 | -98.9 | -170.0 | NA | NA | NA | ||||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | THR | A:605 | A:605 | 12.0 | 0.086 | -92.0 | 178.9 | 12.0 | 0.086 | 0.0 |
UNL UNL UNL HOH |
7.060 8.674 6.907 3.499 |
N OG1 CG2 O |
O1 O1 O1 O |
|||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | THR | A:605 | A:605 | 12.0 | 0.086 | -93.4 | -168.8 | 12.0 | 0.086 | 0.0 |
UNL HOH |
8.799 2.849 |
CG2 N |
O2 O |
|||
| THR | E:605 | N:605 | 11.0 | 0.079 | -93.5 | -169.1 | NA | NA | NA | ||||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 14.0 | 0.1 | -98.0 | -175.3 | 14.0 | 0.1 | 0.0 |
UNL HOH |
8.953 2.869 |
CG2 O |
O3 O |
|||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 18.0 | 0.129 | -103.0 | -176.8 | 18.0 | 0.129 | 0.0 |
UNL UNL UNL UNL HOH |
9.222 8.977 3.667 7.119 4.535 |
CG2 O O OG1 O |
O3 N1 C1 O O |
|||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 13.0 | 0.093 | -87.4 | -176.9 | 13.0 | 0.093 | 0.0 |
UNL UNL HOH |
8.725 6.817 2.944 |
CG2 CG2 N |
O3 O O |
|||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | THR | A:605 | A:605 | 13.0 | 0.093 | -85.8 | -171.3 | 13.0 | 0.093 | 0.0 |
UNL UNL HOH |
8.957 7.059 2.938 |
CG2 N N |
O2 O O |
|||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 15.0 | 0.107 | -94.1 | -172.7 | 15.0 | 0.107 | 0.0 |
UNL UNL HOH |
8.812 7.347 3.028 |
CG2 OG1 N |
O3 O O |
|||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 17.0 | 0.121 | -107.9 | -168.6 | 17.0 | 0.121 | 0.0 |
UNL HOH |
9.077 3.118 |
CG2 N |
O3 O |
|||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:605 | A:605 | 14.0 | 0.1 | -89.5 | -175.7 | 14.0 | 0.1 | 0.0 |
UNL UNL UNL HOH |
8.493 6.861 6.458 2.801 |
CG2 CG2 N N |
O3 O O O |
|||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | THR | A:648 | A:648 | 4.0 | 0.029 | -81.8 | 172.0 | ||