Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 256509 . G A CCDS3853.1:NM_004168.2:c.1969Gtc>Atc_NP_004159.2:p.657V>I Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 VAL A:625 A:657 17.0 0.11 -89.9 110.0 17.0 0.11 0.0 MLI
HOH
 9.349
6.874
 O
N
 O9
O
VAL C:625 C:657 16.0 0.103 -88.3 112.6 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 VAL A:657 A:615 22.0 0.142 -79.2 114.2 22.0 0.142 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 VAL A:657 A:615 20.0 0.129 -104.6 110.1 20.0 0.129 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 VAL A:615 A:615 23.0 0.148 -111.1 110.8 23.0 0.148 0.0 HOH
 5.225
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 VAL A:615 A:615 23.0 0.148 -108.6 108.4 23.0 0.148 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 20.0 0.129 -106.3 105.2 20.0 0.129 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 16.0 0.103 -107.0 104.3 16.0 0.103 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 22.0 0.142 -94.4 110.5 22.0 0.142 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 23.0 0.148 -101.3 106.1 23.0 0.148 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 15.0 0.097 -91.7 111.5 15.0 0.097 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 23.0 0.148 -101.1 113.0 23.0 0.148 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 31.0 0.2 -110.5 104.8 31.0 0.2 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 16.0 0.103 -94.4 115.0 16.0 0.103 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 24.0 0.155 -92.5 114.7 24.0 0.155 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 21.0 0.135 -94.6 114.6 21.0 0.135 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 21.0 0.135 -97.5 107.6 21.0 0.135 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 21.0 0.135 -105.8 105.0 21.0 0.135 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 18.0 0.116 -92.2 114.9 18.0 0.116 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 22.0 0.142 -99.4 106.7 22.0 0.142 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 22.0 0.142 -103.9 112.7 22.0 0.142 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 19.0 0.123 -93.5 109.6 19.0 0.123 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 VAL A:615 A:615 17.0 0.11 -96.8 109.6 17.0 0.11 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 VAL A:615 A:615 19.0 0.123 -105.2 114.7 19.0 0.123 0.0 HOH
 9.169
 CG2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 VAL A:615 A:615 21.0 0.135 -98.7 107.2 21.0 0.135 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 VAL A:614 A:614 22.0 0.142 -108.9 116.6 22.0 0.142 0.0 UNL
HOH
 8.912
3.156
 N
CG1
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 VAL A:614 A:614 22.0 0.142 -116.4 118.9 22.0 0.142 0.0 HOH
 3.100
 CG2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 VAL A:614 A:614 21.0 0.135 -104.3 109.8 21.0 0.135 0.0 UNL
UNL
UNL
UNL
HOH
 8.114
4.962
6.205
8.084
3.542
 CG1
CG2
CG2
CG2
CG1
 O
O
O
O
O
VAL E:614 N:614 22.0 0.142 -106.4 108.2 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 VAL A:614 A:614 20.0 0.129 -108.1 111.8 20.0 0.129 0.0 HOH
 3.513
 CG1
 O
VAL E:614 N:614 21.0 0.135 -107.6 110.6 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 VAL A:614 A:614 24.0 0.155 -114.0 118.0 24.0 0.155 0.0 UNL
UNL
HOH
 8.989
3.487
3.473
 N
CG2
CG1
 O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 VAL A:614 A:614 20.0 0.129 -105.0 107.7 20.0 0.129 0.0 UNL
UNL
HOH
 4.508
7.265
3.335
 CG2
C
CG1
 O4
C2
O
VAL E:614 N:614 20.0 0.129 -106.1 107.1 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 21.0 0.135 -104.5 109.8 21.0 0.135 0.0 UNL
HOH
 3.892
3.609
 CG2
CG1
 O2
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 21.0 0.135 -101.5 114.8 21.0 0.135 0.0 UNL
UNL
HOH
 4.718
8.904
3.871
 CG2
N
CG2
 O3
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 21.0 0.135 -98.5 111.5 21.0 0.135 0.0 UNL
UNL
HOH
 3.764
4.776
3.271
 CG2
N
CG1
 O2
O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 VAL A:614 A:614 21.0 0.135 -102.2 108.0 21.0 0.135 0.0 UNL
HOH
 4.416
3.213
 CG2
CG1
 O1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 22.0 0.142 -91.6 113.6 22.0 0.142 0.0 UNL
HOH
 4.173
6.906
 CG2
CG1
 O2
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 22.0 0.142 -93.1 113.5 22.0 0.142 0.0 UNL
HOH
 4.815
4.077
 CG2
CG2
 O3
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 VAL A:614 A:614 18.0 0.116 -101.9 116.1 18.0 0.116 0.0 UNL
UNL
UNL
HOH
 3.834
4.903
9.498
3.339
 CG2
N
O
CG1
 O2
O
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 VAL A:657 A:657 19.0 0.123 -94.8 110.1