Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 256519 . C A CCDS3853.1:NM_004168.2:c.1979gCc>gAc_NP_004159.2:p.660A>D Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ALA A:628 A:660 43.0 0.374 -148.8 157.9 43.0 0.374 0.0 EDO
EDO
HOH
 6.822
8.995
4.730
 O
O
O
 O1
O1
O
ALA C:628 C:660 44.0 0.383 -135.1 159.2 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ALA A:660 A:618 39.0 0.339 -160.9 -175.0 39.0 0.339 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ALA A:660 A:618 40.0 0.348 -153.7 173.5 40.0 0.348 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ALA A:618 A:618 43.0 0.374 -132.5 -169.5 43.0 0.374 0.0 HOH
 5.492
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ALA A:618 A:618 41.0 0.357 -133.1 -171.3 41.0 0.357 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 45.0 0.391 -139.5 -179.4 45.0 0.391 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 44.0 0.383 -152.7 170.7 44.0 0.383 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 41.0 0.357 -147.1 176.7 41.0 0.357 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 38.0 0.33 -145.1 179.7 38.0 0.33 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 38.0 0.33 -147.5 -178.9 38.0 0.33 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 32.0 0.278 -143.8 -165.3 32.0 0.278 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 43.0 0.374 -153.3 -179.3 43.0 0.374 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 37.0 0.322 -140.7 179.4 37.0 0.322 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 40.0 0.348 -151.2 176.4 40.0 0.348 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 42.0 0.365 -150.0 177.5 42.0 0.365 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 39.0 0.339 -144.0 -176.9 39.0 0.339 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 43.0 0.374 -147.1 -176.0 43.0 0.374 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 41.0 0.357 -152.5 169.4 41.0 0.357 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 39.0 0.339 -144.9 -176.1 39.0 0.339 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 41.0 0.357 -143.9 172.9 41.0 0.357 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 40.0 0.348 -141.9 170.0 40.0 0.348 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ALA A:618 A:618 39.0 0.339 -153.4 164.3 39.0 0.339 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ALA A:618 A:618 41.0 0.357 -149.8 174.4 41.0 0.357 0.0 HOH
 3.338
 CA
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ALA A:618 A:618 39.0 0.339 -157.8 -177.8 39.0 0.339 0.0 HOH
 7.540
 O
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ALA A:617 A:617 41.0 0.357 -155.7 175.0 41.0 0.357 0.0 HOH
 3.520
 CB
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ALA A:617 A:617 39.0 0.339 -170.9 179.0 39.0 0.339 0.0 HOH
 3.600
 CB
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ALA A:617 A:617 42.0 0.365 -146.6 175.0 42.0 0.365 0.0 AZI
UNL
UNL
HOH
 5.840
6.903
6.516
3.391
 O
CB
CA
CB
 N3
O
O
O
ALA E:617 N:617 42.0 0.365 -146.2 175.7 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ALA A:617 A:617 41.0 0.357 -145.9 172.0 41.0 0.357 0.0 HOH
 3.547
 CA
 O
ALA E:617 N:617 42.0 0.365 -144.6 174.2 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ALA A:617 A:617 42.0 0.365 177.6 158.3 42.0 0.365 0.0 HOH
 3.449
 CB
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ALA A:617 A:617 40.0 0.348 -152.1 170.8 40.0 0.348 0.0 UNL
UNL
HOH
 9.651
7.429
3.556
 CB
N
CA
 O4
C2
O
ALA E:617 N:617 40.0 0.348 -152.2 171.5 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 37.0 0.322 -160.4 171.9 37.0 0.322 0.0 UNL
UNL
UNL
HOH
 5.299
9.454
6.037
3.474
 O
CB
O
CB
 O3
O2
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 40.0 0.348 -155.3 178.8 40.0 0.348 0.0 UNL
UNL
UNL
HOH
 6.105
9.217
4.744
3.566
 O
CB
O
CB
 O1
O2
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 36.0 0.313 -154.9 169.1 36.0 0.313 0.0 UNL
UNL
HOH
 9.362
5.290
3.984
 CB
O
CB
 O2
C1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ALA A:617 A:617 45.0 0.391 -137.6 179.5 45.0 0.391 0.0 UNL
UNL
HOH
 5.477
9.652
4.027
 O
CB
CB
 O
O1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 42.0 0.365 -138.7 -172.2 42.0 0.365 0.0 UNL
UNL
HOH
 5.851
9.363
8.117
 O
CB
CB
 O3
O2
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 39.0 0.339 -145.5 172.6 39.0 0.339 0.0 UNL
UNL
HOH
 9.759
5.611
3.306
 CB
O
CB
 O2
C2
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ALA A:617 A:617 36.0 0.313 -152.5 169.5 36.0 0.313 0.0 UNL
UNL
HOH
 9.133
5.737
3.822
 CB
O
CB
 O2
C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ALA A:660 A:660 40.0 0.348 -144.3 175.1