Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35867413 . C A CCDS3911.1:NM_002185.3:c.227gCc>gAc_NP_002176.2:p.76A>D Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 ALA B:77 B:76 21.0 0.183 S 56.4 43.8 21.0 0.183 0.0 HOH
 2.777
 O
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 ALA B:60 B:56 21.0 0.183 S 57.8 28.3 21.0 0.183 0.0 HOH
 2.917
 O
 O
ALA D:60 D:56 24.0 0.209 S 54.7 30.8 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 ALA B:60 B:56 21.0 0.183 S 62.4 13.7 21.0 0.183 0.0
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 ALA A:60 A:56 24.0 0.209 S 55.5 42.3 2.0 0.017 0.192 B:P16871:0.191
 HOH
 2.939
 O
 O
ALA B:60 B:56 26.0 0.226 S 52.1 38.9 25.0 0.217 0.009 A:P16871:0.009
 GOL
HOH
 3.298
3.236
 N
O
 O3
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 ALA A:60 C:56 17.0 0.148 S 56.9 45.2 14.0 0.122 0.026 B:None:0.026
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 ALA G:60 G:56 17.0 0.148 S 40.2 73.2 NA NA NA
ALA I:60 I:56 20.0 0.174 S 54.4 30.2 NA NA NA
ALA J:60 J:56 29.0 0.252 S -64.3 78.8 NA NA NA
ALA K:60 K:56 42.0 0.365 S -67.4 123.9 42.0 0.365 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 ALA A:76 A:76 23.0 0.2 S 51.8 36.7