Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35867500 . G A CCDS3911.1:NM_002185.3:c.314aGc>aAc_NP_002176.2:p.105S>N Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 SER B:106 B:105 4.0 0.035 E -109.2 173.5 4.0 0.035 0.0 HOH
 3.782
 HG
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 SER B:89 B:85 2.0 0.017 E -120.1 166.3 2.0 0.017 0.0 HOH
 4.217
 OG
 O
SER D:89 D:85 4.0 0.035 E -120.9 166.7 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 SER B:89 B:85 1.0 0.009 E -144.5 145.4 1.0 0.009 0.0
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 SER A:89 A:85 3.0 0.026 E -98.5 161.9 3.0 0.026 0.0 HOH
 3.100
 OG
 O
SER B:89 B:85 2.0 0.017 E -118.1 158.8 2.0 0.017 0.0 GOL
HOH
 7.487
3.447
 OG
OG
 O3
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 SER A:89 C:85 2.0 0.017 E -90.4 151.9 2.0 0.017 0.0
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 SER G:89 G:85 3.0 0.026 E -133.4 139.0 NA NA NA
SER I:89 I:85 2.0 0.017 E -135.8 140.5 NA NA NA
SER J:89 J:85 23.0 0.2 E -135.0 140.7 NA NA NA
SER K:89 K:85 16.0 0.139 E -136.0 139.9 16.0 0.139 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 SER A:105 A:105 1.0 0.009 E -83.5 157.1