Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35871172 . C A CCDS3911.1:NM_002185.3:c.394Cct>Act_NP_002176.2:p.132P>T Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 PRO B:133 B:132 3.0 0.021 -61.4 163.8 3.0 0.021 0.0 HOH
 3.252
 HA
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 PRO B:116 B:112 2.0 0.014 -62.6 168.5 2.0 0.014 0.0 HOH
 2.738
 O
 O
PRO D:116 D:112 3.0 0.021 -58.7 168.1 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 PRO B:116 B:112 2.0 0.014 -76.2 163.8 2.0 0.014 0.0 NAG
HOH
 8.997
9.267
 C
CD
 O5
O
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 PRO A:116 A:112 2.0 0.014 -63.0 162.9 2.0 0.014 0.0 NAG
FUC
SO4
HOH
 9.316
8.670
6.346
2.761
 C
C
N
O
 C1
C6
O4
O
PRO B:116 B:112 1.0 0.007 -65.1 168.3 1.0 0.007 0.0 NAG
FUC
NGA
GOL
HOH
 9.234
9.617
5.684
8.792
2.719
 C
C
N
O
O
 O5
O3
O6
O2
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 PRO A:116 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 PRO G:116 G:112 2.0 0.014 -59.6 168.9 NA NA NA
PRO I:116 I:112 2.0 0.014 -60.4 169.3 NA NA NA
PRO J:116 J:112 2.0 0.014 -61.0 169.4 NA NA NA
PRO K:116 K:112 2.0 0.014 -60.1 168.7 2.0 0.014 0.0 NAG
 9.760
 C
 C1

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 PRO A:132 A:132 1.0 0.007 -58.2 145.4