Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35871182 . T A CCDS3911.1:NM_002185.3:c.404cTg>cAg_NP_002176.2:p.135L>Q Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 LEU B:136 B:135 19.0 0.112 E -67.0 136.3 19.0 0.112 0.0 HOH
 9.537
 H
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 LEU B:119 B:115 17.0 0.1 E -60.6 154.3 17.0 0.1 0.0 HOH
 7.531
 N
 O
LEU D:119 D:115 20.0 0.118 E -61.2 155.3 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 LEU B:119 B:115 21.0 0.124 E -70.0 150.5 21.0 0.124 0.0 NAG
HOH
 9.086
7.191
 N
O
 O7
O
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 LEU A:119 A:115 23.0 0.135 E -66.2 152.0 23.0 0.135 0.0 NAG
HOH
 8.761
2.738
 N
O
 O7
O
LEU B:119 B:115 20.0 0.118 E -59.5 140.1 20.0 0.118 0.0 NAG
FUC
GOL
HOH
 9.142
9.169
8.958
4.663
 N
N
CD2
N
 O7
O3
O3
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 LEU A:119 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 LEU G:119 G:115 17.0 0.1 E -73.0 138.2 NA NA NA
LEU I:119 I:115 16.0 0.094 E -72.9 138.9 NA NA NA
LEU J:119 J:115 14.0 0.082 E -72.4 139.1 NA NA NA
LEU K:119 K:115 15.0 0.088 E -72.7 138.8 4.0 0.024 0.064 B:None:0.041
A:None:0.041
 NAG
 8.393
 N
 O7

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 LEU A:135 A:135 19.0 0.112 E -63.6 125.3