Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35871238 . C A CCDS3911.1:NM_002185.3:c.460Cac>Aac_NP_002176.2:p.154H>N Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 HIS B:155 B:154 7.0 0.036 G -60.9 -22.3 7.0 0.036 0.0 HOH
 3.672
 HD2
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 HIS B:138 B:134 6.0 0.031 G -68.8 -19.1 6.0 0.031 0.0 HOH
 4.055
 CE1
 O
HIS D:138 D:134 5.0 0.026 G -69.1 -18.6 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 HIS B:138 B:134 4.0 0.021 G -73.8 -18.6 4.0 0.021 0.0 NAG
 7.556
 N
 C6
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 HIS A:138 A:134 4.0 0.021 G -68.5 -23.4 4.0 0.021 0.0 NAG
FUC
SO4
HOH
 8.032
9.682
7.408
3.512
 N
N
NE2
CE1
 O6
C6
O2
O
HIS B:138 B:134 101.0 0.518 S -40.8 -39.5 101.0 0.518 0.0 NAG
NAG
FUC
NGA
HOH
 4.767
5.837
6.842
5.239
4.058
 ND1
ND1
CE1
N
NE2
 O6
C8
C6
C1
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 HIS A:138 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 HIS G:138 G:134 4.0 0.021 T -77.0 -21.8 NA NA NA
HIS I:138 I:134 3.0 0.015 T -76.2 -19.6 NA NA NA
HIS J:138 J:134 8.0 0.041 T -76.7 -20.9 NA NA NA
HIS K:138 K:134 4.0 0.021 G -77.4 -19.0 4.0 0.021 0.0 NAG
 7.969
 N
 O5

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 HIS A:154 A:154 4.0 0.021 G -62.9 -20.7