Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35871244 . C A CCDS3911.1:NM_002185.3:c.466Caa>Aaa_NP_002176.2:p.156Q>K Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 GLN B:157 B:156 142.0 0.789 G -101.6 5.5 142.0 0.789 0.0 HOH
 7.518
 HE22
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 GLN B:140 B:136 139.0 0.772 G -87.6 6.9 139.0 0.772 0.0 HOH
 3.212
 C
 O
GLN D:140 D:136 135.0 0.75 G -91.8 10.2 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 GLN B:140 B:136 127.0 0.706 G -89.7 15.4 127.0 0.706 0.0 NAG
NAG
 3.589
6.057
 NE2
CG
 C5
O5
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 GLN A:140 A:136 173.0 0.961 G -104.4 8.3 173.0 0.961 0.0 NAG
NAG
FUC
HOH
 4.077
4.544
6.826
4.823
 OE1
NE2
OE1
O
 C6
O3
C1
O
GLN B:140 B:136 21.0 0.117 H -68.1 -13.2 21.0 0.117 0.0 NAG
NGA
SO4
HOH
 9.487
3.130
8.802
6.280
 N
OE1
NE2
CB
 O6
C8
O1
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 GLN A:140 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 GLN G:140 G:136 164.0 0.911 T -91.1 9.4 NA NA NA
GLN I:140 I:136 181.0 1.0 T -93.6 11.9 NA NA NA
GLN J:140 J:136 101.0 NA T -90.2 10.4 NA NA NA
GLN K:140 K:136 102.0 NA G -90.4 10.5 102.0 NA NA NAG
 6.142
 CB
 C6

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 GLN A:156 A:156 179.0 0.994 T -101.0 -24.2