Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35873680 . T A CCDS3911.1:NM_002185.3:c.636taT>taA_NP_002176.2:p.212Y>* Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
 2017-04-05 TYR B:213 B:212 206.0 0.896 S 68.2 20.1 90.0 0.391 0.505 A:Q969D9:0.504
 HOH
 5.950
 HH
 O
3di2 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 TYR B:196 B:192 136.0 0.591 S -69.5 -36.2 42.0 0.183 0.408 A:P13232:0.409
 HOH
 9.423
 OH
 O
TYR D:196 D:192 143.0 0.622 S -71.5 -36.3 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
 2009-01-27 TYR B:196 B:192 129.0 0.561 S -84.7 -44.0 39.0 0.17 0.391 A:P13232:0.391
 HOH
 7.747
 O
 O
3up1 1 P16871 99.54 2e-162 X-RAY
 2012-02-08 TYR A:196 A:192 160.0 0.696 S 71.3 -59.6 84.0 0.365 0.331 B:P16871:0.33
 GOL
HOH
 8.231
2.687
 CB
O
 O3
O
TYR B:196 B:192 166.0 0.722 S 70.9 -65.8 44.0 0.191 0.531 A:P16871:0.53
 NGA
HOH
 7.588
2.694
 CD2
O
 C8
O
6p50 1 P16871 99.54 2e-162 X-RAY
 2019-09-04 TYR A:196 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
 2019-09-04 TYR G:196 G:192 132.0 0.574 S -57.6 -34.9 NA NA NA
TYR I:196 I:192 181.0 0.787 S -59.1 -33.4 NA NA NA
TYR J:196 J:192 148.0 0.643 S -55.4 -36.6 NA NA NA
TYR K:196 K:192 165.0 0.717 S -56.4 -37.2 165.0 0.717 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 TYR A:212 A:212 197.0 0.857 S 60.7 -50.9