Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 35873706 . G A CCDS3911.1:NM_002185.3:c.662aGt>aAt_NP_002176.2:p.221S>N Homo sapiens interleukin 7 receptor (IL7R), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5j11 2 D6RGV2 100.0 7e-163 X-RAY
2017-04-05 SER B:222 B:221 5.0 0.043 -70.0 163.8 5.0 0.043 0.0 HOH
7.522
HB3
O
3di2 2 P16871 99.54 2e-162 X-RAY
2009-01-27 SER B:205 B:201 5.0 0.043 -78.1 167.9 5.0 0.043 0.0 HOH
4.211
CA
O
SER D:205 D:201 5.0 0.043 -80.1 164.9 NA NA NA
3di3 2 P16871 99.54 2e-162 X-RAY
2009-01-27 SER B:205 B:201 2.0 0.017 -74.9 151.5 2.0 0.017 0.0 HOH
7.912
N
O
3up1 1 P16871 99.54 2e-162 X-RAY
2012-02-08 SER A:205 A:201 5.0 0.043 -58.7 162.9 5.0 0.043 0.0 SO4
HOH
7.296
2.935
N
O
O4
O
SER B:205 B:201 5.0 0.043 -66.1 161.0 5.0 0.043 0.0 GOL
HOH
4.622
2.779
O
O
O2
O
6p50 1 P16871 99.54 2e-162 X-RAY
2019-09-04 SER A:205 NA:NA DO NA DO DO DO NA NA NA
6p67 3 P16871 99.54 2e-162 X-RAY
2019-09-04 SER G:205 G:201 3.0 0.026 -66.0 157.9 NA NA NA
SER I:205 I:201 4.0 0.035 -68.3 158.0 NA NA NA
SER J:205 J:201 4.0 0.035 -68.5 157.5 NA NA NA
SER K:205 K:201 4.0 0.035 -67.8 158.2 4.0 0.035 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p16871-f1 1 P16871 100.0 0.0 SER A:221 A:221 5.0 0.043 -55.7 158.4