Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82400741 . G A CCDS4058.1:NM_003401.3:c.3atG>atA_NP_003392.1:p.1M>I Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 MET E:1 F:1 133.0 0.719 360.0 122.0 133.0 0.719 0.0
MET F:1 G:1 111.0 0.6 360.0 98.7 111.0 0.6 0.0
MET M:1 O:1 113.0 0.611 360.0 98.8 113.0 0.611 0.0
MET N:1 P:1 133.0 0.719 360.0 121.8 133.0 0.719 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 MET G:1 F:1 147.0 0.795 360.0 153.5 147.0 0.795 0.0
MET H:1 G:1 123.0 0.665 360.0 127.8 123.0 0.665 0.0
MET Q:1 O:1 120.0 0.649 360.0 127.9 120.0 0.649 0.0
MET R:1 P:1 146.0 0.789 360.0 153.6 146.0 0.789 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 MET G:1 K:1 109.0 0.589 360.0 -17.9 109.0 0.589 0.0
MET H:1 L:1 106.0 0.573 360.0 -34.7 106.0 0.573 0.0
MET J:1 N:1 156.0 0.843 360.0 87.3 156.0 0.843 0.0
MET K:1 O:1 138.0 0.746 360.0 150.0 138.0 0.746 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 MET F:1 H:1 128.0 0.692 360.0 -16.6 128.0 0.692 0.0
MET G:1 I:1 82.0 NA 360.0 168.7 82.0 NA NA
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 MET A:15 A:1 159.0 0.859 360.0 123.0 159.0 0.859 0.0 SO4
HOH
 4.127
3.920
 CE
O
 O1
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 MET A:1 A:1 162.0 0.876 360.0 98.3 162.0 0.876 0.0 HOH
 4.244
 CE
 O
MET B:1 B:1 172.0 0.93 360.0 126.6 172.0 0.93 0.0 HOH
 4.588
 SD
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 MET A:1 A:1 143.0 0.773 360.0 151.5 143.0 0.773 0.0 ACY
HOH
 3.342
4.399
 SD
O
 CH3
O
MET B:1 B:401 122.0 0.659 360.0 156.9 91.0 0.492 0.167 A:Q13426:0.168
 ACY
ACY
HOH
 5.640
3.207
5.579
 SD
CE
CE
 OXT
O
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 MET A:1 A:1 121.0 0.654 360.0 82.7 121.0 0.654 0.0
MET B:1 B:1 154.0 0.832 360.0 99.8 154.0 0.832 0.0
MET C:1 C:1 134.0 0.724 360.0 98.9 NA NA NA
MET D:1 D:1 153.0 0.827 360.0 109.5 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 MET C:21 C:1 142.0 0.768 360.0 151.5 NA NA NA
MET D:21 D:1 123.0 0.665 360.0 156.8 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 MET A:1 A:1 132.0 0.714 360.0 88.5 132.0 0.714 0.0
MET B:1 B:501 124.0 0.67 360.0 66.4 124.0 0.67 0.0
MET E:1 F:1 127.0 0.686 360.0 89.0 127.0 0.686 0.0
MET F:1 G:501 80.0 0.432 360.0 64.4 80.0 0.432 0.0
MET I:1 J:1 97.0 0.524 360.0 -81.8 NA NA NA
MET J:1 K:501 131.0 0.708 360.0 80.5 NA NA NA
MET M:1 N:1 138.0 0.746 360.0 132.6 NA NA NA
MET N:1 P:501 122.0 0.659 360.0 132.9 NA NA NA
MET Q:1 R:1 140.0 0.757 360.0 90.8 NA NA NA
MET R:1 V:501 135.0 0.73 360.0 152.8 NA NA NA
MET W:1 U:1 96.0 0.519 360.0 127.6 NA NA NA
MET X:1 Y:501 137.0 0.741 360.0 148.7 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 MET C:30 C:1 165.0 0.892 360.0 101.4 NA NA NA
MET D:30 D:1 162.0 0.876 360.0 105.1 NA NA NA
MET G:30 G:1 144.0 0.778 360.0 102.1 144.0 0.778 0.0
MET H:30 H:1 147.0 0.795 360.0 106.0 147.0 0.795 0.0
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 MET A:6 A:1 177.0 0.957 360.0 141.7 177.0 0.957 0.0
MET B:6 B:1 163.0 0.881 360.0 167.6 163.0 0.881 0.0
MET E:6 E:1 175.0 0.946 360.0 149.5 175.0 0.946 0.0
MET F:6 F:1 148.0 0.8 360.0 149.6 148.0 0.8 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 MET A:1 A:1 164.0 0.886 360.0 119.8