Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82400747 . A C CCDS4058.1:NM_003401.3:c.9agA>agC_NP_003392.1:p.3R>S Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ARG E:3 F:3 48.0 0.213 E -118.2 150.2 48.0 0.213 0.0
ARG F:3 G:3 66.0 0.293 E -164.9 148.2 66.0 0.293 0.0
ARG M:3 O:3 65.0 0.289 E -165.0 148.3 65.0 0.289 0.0
ARG N:3 P:3 47.0 0.209 E -118.3 150.2 47.0 0.209 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ARG G:3 F:3 51.0 0.227 E -130.1 167.2 51.0 0.227 0.0
ARG H:3 G:3 71.0 0.316 E -168.6 149.1 71.0 0.316 0.0
ARG Q:3 O:3 72.0 0.32 E -168.6 149.0 72.0 0.32 0.0
ARG R:3 P:3 55.0 0.244 E -130.2 167.1 55.0 0.244 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ARG G:3 K:3 9.0 0.04 -113.0 124.0 9.0 0.04 0.0
ARG H:3 L:3 35.0 0.156 E -133.4 139.1 35.0 0.156 0.0
ARG J:3 N:3 87.0 0.387 -128.2 137.1 87.0 0.387 0.0
ARG K:3 O:3 50.0 0.222 E -153.3 136.6 50.0 0.222 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ARG F:3 H:3 96.0 0.427 B -105.0 122.4 96.0 0.427 0.0
ARG G:3 I:3 64.0 0.284 -75.8 73.7 64.0 0.284 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ARG A:17 A:3 55.0 0.244 E -159.2 160.9 55.0 0.244 0.0 SO4
HOH
 3.779
2.939
 NH2
NE
 O1
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ARG A:3 A:3 43.0 0.191 E -165.7 154.8 43.0 0.191 0.0 HOH
 3.101
 O
 O
ARG B:3 B:3 51.0 0.227 E -156.3 154.8 51.0 0.227 0.0 HOH
 2.914
 O
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ARG A:3 A:3 54.0 0.24 E -146.7 167.8 54.0 0.24 0.0 ACY
HOH
 2.933
2.847
 NH2
O
 OXT
O
ARG B:3 B:403 49.0 0.218 E -153.7 140.1 30.0 0.133 0.085 A:Q13426:0.084
 ACY
ACY
HOH
 7.786
3.605
2.836
 NH2
NH2
NH2
 OXT
O
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ARG A:3 A:3 45.0 0.2 E -134.5 178.4 45.0 0.2 0.0 HOH
 5.996
 C
 O
ARG B:3 B:3 77.0 0.342 E -177.4 163.3 77.0 0.342 0.0
ARG C:3 C:3 45.0 0.2 E -148.0 172.5 NA NA NA
ARG D:3 D:3 72.0 0.32 E -174.2 163.6 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ARG C:23 C:3 55.0 0.244 E -146.7 167.9 NA NA NA
ARG D:23 D:3 45.0 0.2 E -153.7 140.1 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ARG A:3 A:3 38.0 0.169 B -171.2 160.3 38.0 0.169 0.0
ARG B:3 B:503 34.0 0.151 -80.0 -175.3 34.0 0.151 0.0
ARG E:3 F:3 45.0 0.2 -89.9 178.9 45.0 0.2 0.0
ARG F:3 G:503 45.0 0.2 -87.4 -174.0 45.0 0.2 0.0
ARG I:3 J:3 41.0 0.182 E -140.5 144.9 NA NA NA
ARG J:3 K:503 39.0 0.173 75.0 165.9 NA NA NA
ARG M:3 N:3 49.0 0.218 -59.1 152.6 NA NA NA
ARG N:3 P:503 81.0 0.36 -51.3 137.0 NA NA NA
ARG Q:3 R:3 37.0 0.164 E -160.8 150.3 NA NA NA
ARG R:3 V:503 32.0 0.142 E -169.7 148.6 NA NA NA
ARG W:3 U:3 74.0 0.329 158.8 168.8 NA NA NA
ARG X:3 Y:503 43.0 0.191 -93.5 178.9 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ARG C:32 C:3 57.0 0.253 E -160.0 152.5 NA NA NA
ARG D:32 D:3 56.0 0.249 E -158.6 153.5 NA NA NA
ARG G:32 G:3 58.0 0.258 E -160.2 153.4 58.0 0.258 0.0
ARG H:32 H:3 56.0 0.249 E -158.3 153.7 56.0 0.249 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 ARG A:6 A:3 44.0 0.196 E -146.8 166.8 44.0 0.196 0.0 HOH
 4.143
 NH1
 O
ARG B:6 B:3 48.0 0.213 E -139.7 156.8 48.0 0.213 0.0 HOH
 4.165
 NH2
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 ARG A:6 A:3 51.0 0.227 E -151.7 167.3 51.0 0.227 0.0
ARG B:6 B:3 55.0 0.244 E -151.8 162.7 55.0 0.244 0.0
ARG C:6 C:3 52.0 0.231 E -151.0 168.6 NA NA NA
ARG D:6 D:3 37.0 0.164 E -151.9 160.8 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 ARG A:6 A:3 47.0 0.209 E -150.5 158.0 47.0 0.209 0.0 HOH
 2.834
 O
 O
ARG B:6 B:3 57.0 0.253 E -150.5 148.2 57.0 0.253 0.0 HOH
 2.991
 O
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 ARG A:6 A:3 50.0 0.222 E -153.2 160.3 50.0 0.222 0.0 HOH
 4.020
 NH1
 O
ARG B:6 B:3 51.0 0.227 E -152.5 158.5 51.0 0.227 0.0 HOH
 3.141
 N
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ARG A:8 A:3 50.0 0.222 E -175.3 167.5 50.0 0.222 0.0
ARG B:8 B:3 39.0 0.173 E -139.1 138.5 39.0 0.173 0.0
ARG E:8 E:3 50.0 0.222 E -165.8 164.6 50.0 0.222 0.0
ARG F:8 F:3 31.0 0.138 E -162.3 156.4 31.0 0.138 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 ARG A:6 A:3 55.0 0.244 E -147.8 162.2 55.0 0.244 0.0 HOH
 2.794
 O
 O
ARG B:6 B:3 52.0 0.231 E -148.0 165.6 52.0 0.231 0.0 HOH
 2.769
 O
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 ARG A:5 A:3 54.0 0.24 E -122.8 172.0 54.0 0.24 0.0 HOH
 4.007
 CD
 O
ARG B:5 B:3 59.0 0.262 E -149.4 145.6 59.0 0.262 0.0 HOH
 2.968
 N
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 ARG A:5 C:3 63.0 0.28 E -154.9 143.5 63.0 0.28 0.0
ARG B:5 D:3 63.0 0.28 E -146.2 137.8 38.0 0.169 0.111 C:Q13426+P12883:0.111
ARG C:5 A:3 47.0 0.209 E -168.2 137.9 47.0 0.209 0.0
ARG D:5 B:3 58.0 0.258 E -159.1 143.5 55.0 0.244 0.014 A:Q13426+P12883:0.013

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ARG A:3 A:3 41.0 0.182 E -144.8 140.2