Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82400773 . C A CCDS4058.1:NM_003401.3:c.35tCt>tAt_NP_003392.1:p.12S>Y Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
2021-04-14 SER E:12 F:12 84.0 0.73 T -62.2 -25.7 84.0 0.73 0.0
SER F:12 G:12 68.0 0.591 T -59.2 -32.9 68.0 0.591 0.0
SER M:12 O:12 66.0 0.574 T -59.0 -33.1 66.0 0.574 0.0
SER N:12 P:12 85.0 0.739 T -62.4 -25.7 85.0 0.739 0.0
7lt3 7 Q13426 99.11 0.0 EM
2021-04-14 SER G:12 F:12 69.0 0.6 T -55.0 -29.5 69.0 0.6 0.0
SER H:12 G:12 58.0 0.504 T -60.0 -28.6 58.0 0.504 0.0
SER Q:12 O:12 59.0 0.513 T -60.1 -28.4 59.0 0.513 0.0
SER R:12 P:12 72.0 0.626 T -55.1 -29.6 72.0 0.626 0.0
7nfc 4 Q13426 99.11 0.0 EM
2021-08-18 SER G:12 K:12 89.0 0.774 S -62.9 -44.5 89.0 0.774 0.0
SER H:12 L:12 100.0 0.87 S -67.5 -63.6 100.0 0.87 0.0
SER J:12 N:12 105.0 0.913 S -70.0 -46.8 105.0 0.913 0.0
SER K:12 O:12 84.0 0.73 S -63.4 -40.1 84.0 0.73 0.0
7nfe 5 Q13426 99.11 0.0 EM
2021-08-18 SER F:12 H:12 62.0 0.539 S -75.4 -29.2 62.0 0.539 0.0
SER G:12 I:12 95.0 0.826 S -97.0 -14.9 95.0 0.826 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
2019-07-31 SER A:26 A:12 57.0 0.496 S -67.5 -44.9 57.0 0.496 0.0 HOH
5.071
N
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
2001-11-21 SER A:12 A:12 77.0 0.67 T -75.0 9.5 77.0 0.67 0.0 HOH
2.826
OG
O
SER B:12 B:12 79.0 0.687 T -88.5 18.9 79.0 0.687 0.0 HOH
2.794
OG
O
1fu1 1 Q13426 99.51 3e-151 X-RAY
2000-12-11 SER A:12 A:12 77.0 0.67 T -81.7 -16.0 77.0 0.67 0.0 HOH
5.401
O
O
SER B:12 B:412 77.0 0.67 T -72.6 -17.7 77.0 0.67 0.0 HOH
2.542
OG
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
2009-08-11 SER A:12 A:12 74.0 0.643 T -56.8 -21.3 74.0 0.643 0.0 HOH
4.883
N
O
SER B:12 B:12 59.0 0.513 S -51.0 -33.9 59.0 0.513 0.0 HOH
5.663
CB
O
SER C:12 C:12 76.0 0.661 T -48.0 -20.6 NA NA NA
SER D:12 D:12 58.0 0.504 S -51.7 -38.5 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
2012-11-07 SER C:32 C:12 77.0 0.67 T -81.7 -16.0 NA NA NA
SER D:32 D:12 78.0 0.678 T -72.6 -17.8 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
2011-12-07 SER A:12 A:12 64.0 0.557 S -64.0 -55.4 64.0 0.557 0.0
SER B:12 B:512 57.0 0.496 T -74.9 -14.7 57.0 0.496 0.0
SER E:12 F:12 35.0 0.304 S -59.3 -58.3 35.0 0.304 0.0
SER F:12 G:512 67.0 0.583 S -56.7 -63.4 67.0 0.583 0.0
SER I:12 J:12 50.0 0.435 T -66.5 6.2 NA NA NA
SER J:12 K:512 55.0 0.478 S -70.7 -14.3 NA NA NA
SER M:12 N:12 56.0 0.487 S -63.9 -49.7 NA NA NA
SER N:12 P:512 56.0 0.487 T -55.3 -40.7 NA NA NA
SER Q:12 R:12 43.0 0.374 T -81.9 7.6 NA NA NA
SER R:12 V:512 62.0 0.539 T -56.1 -46.4 NA NA NA
SER W:12 U:12 60.0 0.522 S -64.5 -27.3 NA NA NA
SER X:12 Y:512 65.0 0.565 S -58.9 -29.8 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
2011-08-03 SER C:41 C:12 75.0 0.652 T -75.1 7.0 NA NA NA
SER D:41 D:12 74.0 0.643 T -78.5 9.7 NA NA NA
SER G:41 G:12 75.0 0.652 T -75.9 8.0 75.0 0.652 0.0
SER H:41 H:12 74.0 0.643 T -78.6 9.0 74.0 0.643 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
2015-07-01 SER A:15 A:12 82.0 0.713 T -75.9 -18.3 82.0 0.713 0.0 HOH
2.782
OG
O
SER B:15 B:12 62.0 0.539 T -73.6 -25.4 62.0 0.539 0.0
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
2015-12-02 SER A:15 A:12 63.0 0.548 S -80.2 128.5 63.0 0.548 0.0
SER B:15 B:12 75.0 0.652 S -82.7 138.7 75.0 0.652 0.0
SER C:15 C:12 83.0 0.722 S -78.0 -21.8 NA NA NA
SER D:15 D:12 49.0 0.426 S -80.1 125.0 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
2015-12-02 SER A:15 A:12 61.0 0.53 S -72.1 -29.7 61.0 0.53 0.0 HOH
5.167
N
O
SER B:15 B:12 77.0 0.67 T -73.5 -28.3 77.0 0.67 0.0 HOH
2.608
OG
O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
2015-12-02 SER A:15 A:12 74.0 0.643 T -74.8 -14.0 74.0 0.643 0.0 HOH
2.901
OG
O
SER B:15 B:12 78.0 0.678 T -76.1 -13.4 78.0 0.678 0.0 HOH
2.768
OG
O
3sr2 1 Q13426 100.0 1e-101 X-RAY
2011-07-20 SER A:17 A:12 71.0 0.617 S -68.6 -28.4 71.0 0.617 0.0
SER B:17 B:12 67.0 0.583 T -81.5 -19.7 67.0 0.583 0.0
SER E:17 E:12 77.0 0.67 S -83.4 -22.0 77.0 0.67 0.0
SER F:17 F:12 62.0 0.539 T -112.1 -33.4 62.0 0.539 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
2010-06-23 SER A:15 A:12 78.0 0.678 T -77.5 -19.8 78.0 0.678 0.0 HOH
2.672
OG
O
SER B:15 B:12 64.0 0.557 S -61.8 -51.1 64.0 0.557 0.0 HOH
3.388
OG
O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
2017-08-09 SER A:14 A:12 78.0 0.678 S -81.6 -16.0 78.0 0.678 0.0 HOH
2.765
OG
O
SER B:14 B:12 79.0 0.687 T -84.6 -11.0 79.0 0.687 0.0 HOH
2.852
OG
O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
2017-08-23 SER A:14 C:12 57.0 0.496 S -73.2 -29.6 57.0 0.496 0.0
SER B:14 D:12 58.0 0.504 S -77.7 -36.3 58.0 0.504 0.0
SER C:14 A:12 47.0 0.409 S -60.6 -62.1 47.0 0.409 0.0
SER D:14 B:12 41.0 0.357 T -66.8 -42.1 41.0 0.357 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 SER A:12 A:12 72.0 0.626 S -70.6 -28.8