Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82400775 . G A CCDS4058.1:NM_003401.3:c.37Gaa>Aaa_NP_003392.1:p.13E>K Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 GLU E:13 F:13 26.0 0.137 -128.9 82.3 26.0 0.137 0.0
GLU F:13 G:13 38.0 0.2 E -135.4 79.9 38.0 0.2 0.0
GLU M:13 O:13 39.0 0.205 E -135.3 79.8 39.0 0.205 0.0
GLU N:13 P:13 25.0 0.132 -128.7 82.3 25.0 0.132 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 GLU G:13 F:13 31.0 0.163 -136.6 79.3 31.0 0.163 0.0
GLU H:13 G:13 41.0 0.216 E -136.4 80.7 41.0 0.216 0.0
GLU Q:13 O:13 42.0 0.221 E -136.3 80.8 42.0 0.221 0.0
GLU R:13 P:13 31.0 0.163 -136.6 79.6 31.0 0.163 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 GLU G:13 K:13 80.0 0.421 -129.5 90.3 80.0 0.421 0.0
GLU H:13 L:13 108.0 0.568 -132.4 109.9 108.0 0.568 0.0
GLU J:13 N:13 71.0 0.374 -133.2 134.1 71.0 0.374 0.0
GLU K:13 O:13 97.0 0.511 -126.5 82.4 97.0 0.511 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 GLU F:13 H:13 44.0 0.232 -129.0 75.1 44.0 0.232 0.0
GLU G:13 I:13 72.0 0.379 -128.3 74.7 72.0 0.379 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 GLU A:27 A:13 71.0 0.374 S -119.4 80.7 71.0 0.374 0.0 HOH
 2.549
 O
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 GLU A:13 A:13 42.0 0.221 E -162.5 65.5 42.0 0.221 0.0 HOH
 2.941
 OE2
 O
GLU B:13 B:13 53.0 0.279 -170.1 56.0 53.0 0.279 0.0 HOH
 2.754
 O
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 GLU A:13 A:13 57.0 0.3 -138.2 69.7 57.0 0.3 0.0 HOH
 3.096
 OE1
 O
GLU B:13 B:413 52.0 0.274 E -133.8 74.1 52.0 0.274 0.0 HOH
 3.150
 OE2
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 GLU A:13 A:13 65.0 0.342 E -141.0 63.6 65.0 0.342 0.0 HOH
 4.281
 C
 O
GLU B:13 B:13 76.0 0.4 S -139.8 90.4 76.0 0.4 0.0 HOH
 5.595
 OE1
 O
GLU C:13 C:13 51.0 0.268 E -147.5 63.4 NA NA NA
GLU D:13 D:13 73.0 0.384 S -137.1 88.8 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 GLU C:33 C:13 55.0 0.289 -138.3 69.8 NA NA NA
GLU D:33 D:13 52.0 0.274 E -133.7 74.1 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 GLU A:13 A:13 32.0 0.168 S -117.9 92.6 32.0 0.168 0.0
GLU B:13 B:513 48.0 0.253 S -151.5 62.8 48.0 0.253 0.0
GLU E:13 F:13 69.0 0.363 S -117.0 72.5 69.0 0.363 0.0
GLU F:13 G:513 104.0 0.547 S -118.4 79.0 104.0 0.547 0.0
GLU I:13 J:13 61.0 0.321 -174.7 76.2 NA NA NA
GLU J:13 K:513 31.0 0.163 -129.2 104.9 NA NA NA
GLU M:13 N:13 64.0 0.337 S -132.1 65.6 NA NA NA
GLU N:13 P:513 43.0 0.226 -138.9 76.2 NA NA NA
GLU Q:13 R:13 65.0 0.342 E 178.2 66.5 NA NA NA
GLU R:13 V:513 78.0 0.411 S -143.6 65.2 NA NA NA
GLU W:13 U:13 54.0 0.284 S -135.7 66.8 NA NA NA
GLU X:13 Y:513 57.0 0.3 S -137.1 74.9 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 GLU C:42 C:13 50.0 0.263 E -165.0 63.8 NA NA NA
GLU D:42 D:13 52.0 0.274 E -167.1 62.2 NA NA NA
GLU G:42 G:13 51.0 0.268 E -165.4 64.1 51.0 0.268 0.0
GLU H:42 H:13 51.0 0.268 E -166.4 62.1 51.0 0.268 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 GLU A:16 A:13 58.0 0.305 E -138.7 61.2 58.0 0.305 0.0 HOH
 4.629
 N
 O
GLU B:16 B:13 40.0 0.211 -149.8 71.9 40.0 0.211 0.0 HOH
 8.339
 OE2
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 GLU A:16 A:13 85.0 0.447 S 56.1 61.6 85.0 0.447 0.0
GLU B:16 B:13 56.0 0.295 S 58.8 57.4 56.0 0.295 0.0
GLU C:16 C:13 66.0 0.347 -137.6 64.9 NA NA NA
GLU D:16 D:13 82.0 0.432 S 59.8 61.5 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 GLU A:16 A:13 71.0 0.374 S -129.9 71.9 71.0 0.374 0.0 HOH
 2.702
 O
 O
GLU B:16 B:13 50.0 0.263 E -128.0 76.7 50.0 0.263 0.0 HOH
 2.254
 O
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 GLU A:16 A:13 54.0 0.284 E -137.4 68.6 54.0 0.284 0.0 HOH
 4.900
 N
 O
GLU B:16 B:13 62.0 0.326 E -138.5 69.4 62.0 0.326 0.0 HOH
 4.757
 N
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 GLU A:18 A:13 33.0 0.174 -139.6 71.3 33.0 0.174 0.0
GLU B:18 B:13 46.0 0.242 -149.4 85.5 46.0 0.242 0.0
GLU E:18 E:13 48.0 0.253 -137.8 79.2 48.0 0.253 0.0
GLU F:18 F:13 53.0 0.279 -134.6 78.6 53.0 0.279 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 GLU A:16 A:13 58.0 0.305 E -129.8 66.7 58.0 0.305 0.0 HOH
 2.615
 O
 O
GLU B:16 B:13 76.0 0.4 S -115.9 71.4 76.0 0.4 0.0 HOH
 2.442
 O
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 GLU A:15 A:13 49.0 0.258 -137.8 77.0 49.0 0.258 0.0 HOH
 2.851
 OE1
 O
GLU B:15 B:13 43.0 0.226 E -138.2 77.5 43.0 0.226 0.0 HOH
 2.552
 O
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 GLU A:15 C:13 65.0 0.342 S -138.9 80.2 65.0 0.342 0.0
GLU B:15 D:13 66.0 0.347 S -127.3 78.3 66.0 0.347 0.0
GLU C:15 A:13 68.0 0.358 S -108.3 93.6 68.0 0.358 0.0
GLU D:15 B:13 82.0 0.432 S -122.3 79.6 82.0 0.432 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 GLU A:13 A:13 45.0 0.237 -135.1 68.6