Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82400865 . T A CCDS4058.1:NM_003401.3:c.127Tgg>Agg_NP_003392.1:p.43W>R Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 TRP E:43 F:43 8.0 0.031 E -140.8 156.1 8.0 0.031 0.0
TRP F:43 G:43 14.0 0.055 E -145.4 131.5 14.0 0.055 0.0
TRP M:43 O:43 15.0 0.059 E -145.3 131.4 15.0 0.059 0.0
TRP N:43 P:43 8.0 0.031 E -140.9 156.0 8.0 0.031 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 TRP G:43 F:43 7.0 0.027 E -139.9 152.8 7.0 0.027 0.0
TRP H:43 G:43 2.0 0.008 E -110.3 140.6 2.0 0.008 0.0
TRP Q:43 O:43 2.0 0.008 E -110.7 140.7 2.0 0.008 0.0
TRP R:43 P:43 7.0 0.027 E -140.1 152.6 7.0 0.027 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 TRP G:43 K:43 32.0 0.125 E -147.2 151.7 32.0 0.125 0.0
TRP H:43 L:43 19.0 0.075 E -120.5 98.6 19.0 0.075 0.0
TRP J:43 N:43 108.0 0.424 E -134.0 101.6 108.0 0.424 0.0
TRP K:43 O:43 67.0 0.263 E -143.7 121.8 67.0 0.263 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 TRP F:43 H:43 1.0 0.004 E -121.3 98.3 1.0 0.004 0.0
TRP G:43 I:43 12.0 0.047 E -138.7 90.7 12.0 0.047 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 TRP A:57 A:43 5.0 0.02 E -117.6 128.0 5.0 0.02 0.0 HOH
 3.830
 NE1
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 TRP A:43 A:43 8.0 0.031 E -123.5 134.7 8.0 0.031 0.0 HOH
 4.218
 CH2
 O
TRP B:43 B:43 7.0 0.027 E -128.1 136.3 7.0 0.027 0.0 HOH
 2.809
 NE1
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 TRP A:43 A:43 4.0 0.016 E -129.1 127.9 4.0 0.016 0.0 HOH
 6.970
 O
 O
TRP B:43 B:443 4.0 0.016 E -123.0 134.5 4.0 0.016 0.0 ACY
HOH
 9.590
7.746
 O
C
 OXT
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 TRP A:43 A:43 17.0 0.067 E -118.8 145.1 17.0 0.067 0.0 HOH
 7.360
 NE1
 O
TRP B:43 B:43 3.0 0.012 E -120.0 129.6 3.0 0.012 0.0 HOH
 7.106
 CZ2
 O
TRP C:43 C:43 5.0 0.02 E -113.5 149.2 NA NA NA
TRP D:43 D:43 3.0 0.012 E -114.9 133.0 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 TRP C:63 C:43 12.0 0.047 E -129.0 128.0 NA NA NA
TRP D:63 D:43 4.0 0.016 E -123.1 134.5 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 TRP A:43 A:43 22.0 0.086 176.4 88.5 22.0 0.086 0.0
TRP B:43 B:543 24.0 0.094 E -146.8 107.3 24.0 0.094 0.0
TRP E:43 F:43 15.0 0.059 E -152.5 127.1 15.0 0.059 0.0
TRP F:43 G:543 10.0 0.039 B -149.9 150.2 10.0 0.039 0.0
TRP I:43 J:43 24.0 0.094 E -143.6 133.8 NA NA NA
TRP J:43 K:543 28.0 0.11 -155.4 99.7 NA NA NA
TRP M:43 N:43 1.0 0.004 90.1 148.6 NA NA NA
TRP N:43 P:543 5.0 0.02 E -113.6 155.7 NA NA NA
TRP Q:43 R:43 16.0 0.063 E -146.4 158.3 NA NA NA
TRP R:43 V:543 9.0 0.035 -132.8 169.8 NA NA NA
TRP W:43 U:43 10.0 0.039 E -150.0 147.6 NA NA NA
TRP X:43 Y:543 5.0 0.02 E -143.0 109.9 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 TRP C:72 C:43 8.0 0.031 E -124.7 132.9 NA NA NA
TRP D:72 D:43 6.0 0.024 E -125.7 133.2 NA NA NA
TRP G:72 G:43 7.0 0.027 E -124.8 132.9 7.0 0.027 0.0
TRP H:72 H:43 4.0 0.016 E -125.7 133.2 4.0 0.016 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 TRP A:46 A:43 5.0 0.02 E -127.0 133.0 5.0 0.02 0.0 HOH
 5.876
 C
 O
TRP B:46 B:43 6.0 0.024 E -132.4 135.1 6.0 0.024 0.0 HOH
 9.139
 CH2
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 TRP A:46 A:43 1.0 0.004 E -121.4 120.1 1.0 0.004 0.0
TRP B:46 B:43 3.0 0.012 E -121.9 121.0 3.0 0.012 0.0
TRP C:46 C:43 6.0 0.024 E -121.1 119.4 NA NA NA
TRP D:46 D:43 2.0 0.008 E -122.0 119.8 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 TRP A:46 A:43 7.0 0.027 E -119.8 133.1 7.0 0.027 0.0 HOH
 2.954
 NE1
 O
TRP B:46 B:43 5.0 0.02 E -121.1 135.3 5.0 0.02 0.0 HOH
 5.635
 N
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 TRP A:46 A:43 4.0 0.016 E -127.3 140.4 4.0 0.016 0.0 HOH
 4.244
 CH2
 O
TRP B:46 B:43 5.0 0.02 E -126.8 140.0 5.0 0.02 0.0 HOH
 5.403
 N
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 TRP A:48 A:43 2.0 0.008 E -117.0 160.2 2.0 0.008 0.0
TRP B:48 B:43 13.0 0.051 E -118.5 133.6 13.0 0.051 0.0
TRP E:48 E:43 6.0 0.024 E -130.5 140.0 6.0 0.024 0.0
TRP F:48 F:43 14.0 0.055 E -112.7 152.9 14.0 0.055 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 TRP A:46 A:43 3.0 0.012 E -127.2 129.0 3.0 0.012 0.0 HOH
 2.796
 NE1
 O
TRP B:46 B:43 10.0 0.039 E -128.9 133.4 10.0 0.039 0.0 HOH
 3.319
 NE1
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 TRP A:45 A:43 7.0 0.027 E -131.7 136.0 7.0 0.027 0.0 HOH
 2.868
 NE1
 O
TRP B:45 B:43 4.0 0.016 E -126.0 137.7 4.0 0.016 0.0 HOH
 2.960
 NE1
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 TRP A:45 C:43 2.0 0.008 E -129.3 136.9 2.0 0.008 0.0
TRP B:45 D:43 5.0 0.02 E -133.9 127.3 5.0 0.02 0.0
TRP C:45 A:43 4.0 0.016 E -135.3 120.3 4.0 0.016 0.0
TRP D:45 B:43 11.0 0.043 E -127.6 128.1 11.0 0.043 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 TRP A:43 A:43 7.0 0.027 E -130.8 129.3