Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82406873 . G A CCDS4058.1:NM_003401.3:c.166Gct>Act_NP_003392.1:p.56A>T Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ALA E:56 F:56 0.0 0.0 H -70.0 -24.4 0.0 0.0 0.0
ALA F:56 G:56 16.0 0.139 H -80.1 46.2 16.0 0.139 0.0
ALA M:56 O:56 16.0 0.139 H -80.2 46.3 16.0 0.139 0.0
ALA N:56 P:56 0.0 0.0 H -69.8 -24.3 0.0 0.0 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ALA G:56 F:56 0.0 0.0 H -65.0 -39.0 0.0 0.0 0.0
ALA H:56 G:56 8.0 0.07 H -72.7 45.1 8.0 0.07 0.0
ALA Q:56 O:56 8.0 0.07 H -72.7 45.1 8.0 0.07 0.0
ALA R:56 P:56 0.0 0.0 H -65.2 -38.9 0.0 0.0 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ALA G:56 K:56 66.0 0.574 H -75.4 -35.8 66.0 0.574 0.0
ALA H:56 L:56 14.0 0.122 G -94.1 3.7 14.0 0.122 0.0
ALA J:56 N:56 35.0 0.304 H -109.0 -14.5 8.0 0.07 0.234 M:Q9H9Q4:0.235
ALA K:56 O:56 24.0 0.209 H -70.9 -62.2 24.0 0.209 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ALA F:56 H:56 11.0 0.096 H -61.8 -41.4 11.0 0.096 0.0
ALA G:56 I:56 1.0 0.009 H -68.1 -43.7 1.0 0.009 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ALA A:70 A:56 0.0 0.0 H -73.9 -38.7 0.0 0.0 0.0 HOH
 4.709
 CB
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ALA A:56 A:56 1.0 0.009 H -61.9 -43.7 1.0 0.009 0.0 HOH
 3.578
 CB
 O
ALA B:56 B:56 1.0 0.009 H -64.4 -15.7 1.0 0.009 0.0 HOH
 7.306
 CB
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ALA A:56 A:56 2.0 0.017 H -57.8 -37.7 2.0 0.017 0.0 ACY
ACY
HOH
 9.454
6.896
3.889
 O
N
CB
 O
CH3
O
ALA B:56 B:456 2.0 0.017 H -62.1 -32.3 2.0 0.017 0.0 HOH
 6.983
 N
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ALA A:56 A:56 3.0 0.026 H -63.2 -38.1 3.0 0.026 0.0 HOH
 4.896
 O
 O
ALA B:56 B:56 8.0 0.07 H -77.8 2.8 8.0 0.07 0.0
ALA C:56 C:56 3.0 0.026 H -59.8 -43.4 NA NA NA
ALA D:56 D:56 11.0 0.096 H -72.7 0.6 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ALA C:76 C:56 2.0 0.017 H -57.7 -37.8 NA NA NA
ALA D:76 D:56 2.0 0.017 H -62.1 -32.2 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ALA A:56 A:56 1.0 0.009 H -61.4 -33.2 1.0 0.009 0.0
ALA B:56 B:556 1.0 0.009 T -68.5 -18.4 1.0 0.009 0.0
ALA E:56 F:56 2.0 0.017 H -59.5 -55.7 2.0 0.017 0.0
ALA F:56 G:556 11.0 0.096 H -66.4 -15.9 11.0 0.096 0.0
ALA I:56 J:56 0.0 0.0 H -51.7 -77.7 NA NA NA
ALA J:56 K:556 8.0 0.07 G -70.3 -19.9 NA NA NA
ALA M:56 N:56 0.0 0.0 H -59.5 -64.7 NA NA NA
ALA N:56 P:556 0.0 0.0 T -82.3 -11.3 NA NA NA
ALA Q:56 R:56 2.0 0.017 H -74.0 -25.6 NA NA NA
ALA R:56 V:556 1.0 0.009 H -86.0 -41.3 NA NA NA
ALA W:56 U:56 3.0 0.026 H -50.6 -37.2 NA NA NA
ALA X:56 Y:556 2.0 0.017 H -71.9 -54.0 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ALA C:85 C:56 0.0 0.0 H -63.6 -29.9 NA NA NA
ALA D:85 D:56 0.0 0.0 H -63.1 -25.7 NA NA NA
ALA G:85 G:56 0.0 0.0 H -63.4 -30.2 0.0 0.0 0.0
ALA H:85 H:56 0.0 0.0 H -63.3 -25.7 0.0 0.0 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 ALA A:59 A:56 3.0 0.026 H -57.9 -40.6 3.0 0.026 0.0 HOH
 7.961
 N
 O
ALA B:59 B:56 2.0 0.017 H -63.6 -40.2 2.0 0.017 0.0
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 ALA A:59 A:56 0.0 0.0 H -71.6 -35.9 0.0 0.0 0.0
ALA B:59 B:56 1.0 0.009 H -72.5 -36.9 1.0 0.009 0.0 HOH
 8.937
 N
 O
ALA C:59 C:56 0.0 0.0 H -73.2 -35.6 NA NA NA
ALA D:59 D:56 0.0 0.0 H -71.6 -35.1 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 ALA A:59 A:56 0.0 0.0 H -68.7 -40.9 0.0 0.0 0.0 HOH
 6.693
 O
 O
ALA B:59 B:56 0.0 0.0 H -67.6 -38.9 0.0 0.0 0.0 HOH
 6.667
 O
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 ALA A:59 A:56 3.0 0.026 H -66.6 -48.9 3.0 0.026 0.0 HOH
 8.924
 O
 O
ALA B:59 B:56 2.0 0.017 H -66.1 -50.3 2.0 0.017 0.0
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ALA A:61 A:56 1.0 0.009 H -67.9 -36.9 1.0 0.009 0.0
ALA B:61 B:56 0.0 0.0 H -53.3 -37.6 0.0 0.0 0.0
ALA E:61 E:56 0.0 0.0 H -57.6 -29.4 0.0 0.0 0.0
ALA F:61 F:56 1.0 0.009 H -61.9 -35.4 1.0 0.009 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 ALA A:59 A:56 4.0 0.035 H -54.8 -42.2 4.0 0.035 0.0 HOH
 3.813
 CB
 O
ALA B:59 B:56 3.0 0.026 H -57.3 -50.8 3.0 0.026 0.0 HOH
 7.634
 CB
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 ALA A:58 A:56 3.0 0.026 H -66.4 -18.2 3.0 0.026 0.0 HOH
 8.842
 N
 O
ALA B:58 B:56 0.0 0.0 H -65.9 -37.9 0.0 0.0 0.0 HOH
 3.646
 CB
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 ALA A:58 C:56 4.0 0.035 H -75.4 -31.3 4.0 0.035 0.0
ALA B:58 D:56 3.0 0.026 H -68.2 -40.8 3.0 0.026 0.0
ALA C:58 A:56 2.0 0.017 H -69.6 -38.2 2.0 0.017 0.0
ALA D:58 B:56 3.0 0.026 H -79.9 -26.7 3.0 0.026 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ALA A:56 A:56 0.0 0.0 H -62.5 -43.2