Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82406916 . T A CCDS4058.1:NM_003401.3:c.209cTg>cAg_NP_003392.1:p.70L>Q Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 LEU E:70 F:70 5.0 0.029 H -63.0 -36.8 5.0 0.029 0.0
LEU F:70 G:70 8.0 0.047 H -61.6 -52.2 8.0 0.047 0.0
LEU M:70 O:70 7.0 0.041 H -61.5 -52.4 7.0 0.041 0.0
LEU N:70 P:70 3.0 0.018 H -63.2 -36.6 3.0 0.018 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 LEU G:70 F:70 5.0 0.029 H -61.2 -44.2 5.0 0.029 0.0
LEU H:70 G:70 6.0 0.035 H -67.6 -43.6 6.0 0.035 0.0
LEU Q:70 O:70 7.0 0.041 H -67.8 -43.4 7.0 0.041 0.0
LEU R:70 P:70 6.0 0.035 H -61.3 -44.1 6.0 0.035 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 LEU G:70 K:70 42.0 0.247 H -63.0 -43.2 42.0 0.247 0.0
LEU H:70 L:70 72.0 0.424 H -64.6 -40.5 72.0 0.424 0.0
LEU J:70 N:70 30.0 0.176 H -62.9 -41.6 30.0 0.176 0.0
LEU K:70 O:70 15.0 0.088 H -64.2 -42.7 15.0 0.088 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 LEU F:70 H:70 7.0 0.041 H -61.3 -41.9 7.0 0.041 0.0
LEU G:70 I:70 0.0 0.0 I -60.8 -43.5 0.0 0.0 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 LEU A:84 A:70 0.0 0.0 H -64.9 -48.9 0.0 0.0 0.0 GOL
HOH
 9.455
6.151
 N
N
 O2
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 LEU A:70 A:70 3.0 0.018 H -61.0 -41.7 3.0 0.018 0.0 HOH
 4.891
 CD1
 O
LEU B:70 B:70 4.0 0.024 H -66.4 -38.4 4.0 0.024 0.0 HOH
 6.299
 C
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 LEU A:70 A:70 4.0 0.024 H -60.6 -41.1 4.0 0.024 0.0 ACY
ACY
HOH
 8.371
4.186
6.334
 N
CD2
N
 O
CH3
O
LEU B:70 B:470 6.0 0.035 H -60.3 -40.0 6.0 0.035 0.0 HOH
 5.531
 CD1
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 LEU A:70 A:70 1.0 0.006 H -52.6 -47.9 1.0 0.006 0.0 HOH
 6.113
 C
 O
LEU B:70 B:70 13.0 0.076 H -66.0 -64.8 13.0 0.076 0.0 HOH
 8.787
 O
 O
LEU C:70 C:70 3.0 0.018 H -55.7 -44.6 NA NA NA
LEU D:70 D:70 9.0 0.053 H -72.5 -59.6 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 LEU C:90 C:70 5.0 0.029 H -60.6 -41.1 NA NA NA
LEU D:90 D:70 6.0 0.035 H -60.3 -40.1 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 LEU A:70 A:70 31.0 0.182 T -85.0 -29.0 31.0 0.182 0.0
LEU B:70 B:570 15.0 0.088 H -54.2 -28.7 15.0 0.088 0.0
LEU E:70 F:70 0.0 0.0 H -67.7 -55.2 0.0 0.0 0.0
LEU F:70 G:570 10.0 0.059 H -52.6 -61.9 10.0 0.059 0.0
LEU I:70 J:70 6.0 0.035 H -84.4 -21.3 NA NA NA
LEU J:70 K:570 23.0 0.135 H -119.7 -54.2 NA NA NA
LEU M:70 N:70 3.0 0.018 H -53.8 -66.0 NA NA NA
LEU N:70 P:570 0.0 0.0 H -71.0 -46.4 NA NA NA
LEU Q:70 R:70 10.0 0.059 H -60.0 -36.8 NA NA NA
LEU R:70 V:570 6.0 0.035 H -68.0 -60.7 NA NA NA
LEU W:70 U:70 1.0 0.006 H -57.5 -49.9 NA NA NA
LEU X:70 Y:570 12.0 0.071 H -54.8 -39.1 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 LEU C:99 C:70 3.0 0.018 H -63.4 -40.4 NA NA NA
LEU D:99 D:70 3.0 0.018 H -64.2 -40.3 NA NA NA
LEU G:99 G:70 3.0 0.018 H -63.4 -40.4 3.0 0.018 0.0
LEU H:99 H:70 3.0 0.018 H -65.0 -39.3 3.0 0.018 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 LEU A:73 A:70 1.0 0.006 H -67.9 -39.9 1.0 0.006 0.0 HOH
 8.868
 CD1
 O
LEU B:73 B:70 2.0 0.012 H -58.7 -41.7 2.0 0.012 0.0 HOH
 8.796
 N
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 LEU A:73 A:70 1.0 0.006 H -63.1 -41.0 1.0 0.006 0.0
LEU B:73 B:70 1.0 0.006 H -61.6 -40.4 1.0 0.006 0.0
LEU C:73 C:70 0.0 0.0 H -62.3 -41.4 NA NA NA
LEU D:73 D:70 1.0 0.006 H -62.6 -41.6 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 LEU A:73 A:70 1.0 0.006 H -63.0 -38.2 1.0 0.006 0.0 HOH
 7.348
 O
 O
LEU B:73 B:70 4.0 0.024 H -63.7 -38.5 4.0 0.024 0.0 HOH
 6.345
 N
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 LEU A:73 A:70 4.0 0.024 H -58.3 -45.3 4.0 0.024 0.0 HOH
 9.454
 C
 O
LEU B:73 B:70 3.0 0.018 H -58.6 -44.5 3.0 0.018 0.0 HOH
 7.687
 CB
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 LEU A:75 A:70 20.0 0.118 H -77.1 -8.3 20.0 0.118 0.0
LEU B:75 B:70 15.0 0.088 H -79.8 6.0 15.0 0.088 0.0
LEU E:75 E:70 14.0 0.082 H -89.3 -21.0 14.0 0.082 0.0
LEU F:75 F:70 8.0 0.047 T -85.9 2.7 8.0 0.047 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 LEU A:73 A:70 3.0 0.018 H -63.1 -43.8 3.0 0.018 0.0 HOH
 4.159
 CD1
 O
LEU B:73 B:70 3.0 0.018 H -63.2 -39.7 3.0 0.018 0.0 HOH
 6.352
 N
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 LEU A:72 A:70 5.0 0.029 H -66.5 -38.2 5.0 0.029 0.0 HOH
 7.005
 O
 O
LEU B:72 B:70 3.0 0.018 H -56.5 -42.0 3.0 0.018 0.0 HOH
 6.385
 C
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 LEU A:72 C:70 0.0 0.0 H -72.7 -32.6 0.0 0.0 0.0
LEU B:72 D:70 0.0 0.0 H -68.9 -32.9 0.0 0.0 0.0
LEU C:72 A:70 0.0 0.0 H -66.4 -47.5 0.0 0.0 0.0
LEU D:72 B:70 0.0 0.0 H -63.4 -41.1 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 LEU A:70 A:70 1.0 0.006 H -59.5 -42.8