Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82406929 . G A CCDS4058.1:NM_003401.3:c.222ttG>ttA_NP_003392.1:p.74L>L Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
2021-04-14 LEU E:74 F:74 0.0 0.0 H -91.9 -29.7 0.0 0.0 0.0
LEU F:74 G:74 13.0 0.076 T -73.5 -50.6 13.0 0.076 0.0
LEU M:74 O:74 12.0 0.071 T -73.6 -50.6 12.0 0.071 0.0
LEU N:74 P:74 1.0 0.006 H -92.0 -29.6 1.0 0.006 0.0
7lt3 7 Q13426 99.11 0.0 EM
2021-04-14 LEU G:74 F:74 1.0 0.006 H -94.9 -26.0 1.0 0.006 0.0
LEU H:74 G:74 11.0 0.065 T -78.7 -65.6 11.0 0.065 0.0
LEU Q:74 O:74 12.0 0.071 T -78.5 -65.9 12.0 0.071 0.0
LEU R:74 P:74 0.0 0.0 H -95.0 -26.0 0.0 0.0 0.0
7nfc 4 Q13426 99.11 0.0 EM
2021-08-18 LEU G:74 K:74 32.0 0.188 H -86.7 -43.7 32.0 0.188 0.0
LEU H:74 L:74 68.0 0.4 H -70.6 -37.9 68.0 0.4 0.0
LEU J:74 N:74 45.0 0.265 H -65.8 -37.6 45.0 0.265 0.0
LEU K:74 O:74 103.0 0.606 T -106.1 -54.3 103.0 0.606 0.0
7nfe 5 Q13426 99.11 0.0 EM
2021-08-18 LEU F:74 H:74 1.0 NA H -69.0 -48.3 1.0 NA NA
LEU G:74 I:74 3.0 0.018 I -61.8 -40.5 3.0 0.018 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
2019-07-31 LEU A:88 A:74 0.0 0.0 H -94.7 -23.6 0.0 0.0 0.0 SO4
HOH
7.372
5.651
O
N
O4
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
2001-11-21 LEU A:74 A:74 1.0 0.006 H -95.8 -31.0 1.0 0.006 0.0 HOH
3.446
O
O
LEU B:74 B:74 0.0 0.0 H -98.0 -26.3 0.0 0.0 0.0 HOH
3.119
O
O
1fu1 1 Q13426 99.51 3e-151 X-RAY
2000-12-11 LEU A:74 A:74 2.0 0.012 H -110.0 -12.3 2.0 0.012 0.0 ACY
HOH
6.255
3.779
CD1
C
CH3
O
LEU B:74 B:474 2.0 0.012 H -101.4 -15.6 2.0 0.012 0.0 HOH
3.768
C
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
2009-08-11 LEU A:74 A:74 0.0 0.0 H -89.1 -13.5 0.0 0.0 0.0 HOH
2.239
O
O
LEU B:74 B:74 7.0 0.041 H -124.3 -51.2 7.0 0.041 0.0 HOH
5.286
O
O
LEU C:74 C:74 0.0 0.0 H -85.4 -12.3 NA NA NA
LEU D:74 D:74 8.0 0.047 H -131.4 -57.9 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
2012-11-07 LEU C:94 C:74 2.0 0.012 H -110.0 -12.2 NA NA NA
LEU D:94 D:74 2.0 0.012 H -101.4 -15.6 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
2011-12-07 LEU A:74 A:74 29.0 0.171 T -70.7 7.7 29.0 0.171 0.0
LEU B:74 B:574 13.0 0.076 S -144.0 6.3 13.0 0.076 0.0
LEU E:74 F:74 3.0 0.018 T -74.6 19.7 3.0 0.018 0.0
LEU F:74 G:574 2.0 0.012 T -84.2 -64.0 2.0 0.012 0.0
LEU I:74 J:74 17.0 0.1 T -56.1 -66.9 NA NA NA
LEU J:74 K:574 27.0 0.159 H -112.0 -31.2 NA NA NA
LEU M:74 N:74 6.0 0.035 T -76.0 5.8 NA NA NA
LEU N:74 P:574 8.0 0.047 S -78.8 -102.5 NA NA NA
LEU Q:74 R:74 0.0 0.0 T -82.9 -27.1 NA NA NA
LEU R:74 V:574 15.0 0.088 T -103.4 -74.5 NA NA NA
LEU W:74 U:74 8.0 0.047 T -105.5 5.0 NA NA NA
LEU X:74 Y:574 10.0 0.059 S -123.1 60.8 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
2011-08-03 LEU C:103 C:74 1.0 0.006 H -95.8 -29.3 NA NA NA
LEU D:103 D:74 1.0 0.006 H -96.7 -27.9 NA NA NA
LEU G:103 G:74 1.0 0.006 H -96.2 -29.1 1.0 0.006 0.0
LEU H:103 H:74 0.0 0.0 H -97.3 -27.8 0.0 0.0 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
2015-07-01 LEU A:77 A:74 1.0 0.006 H -104.0 -25.2 1.0 0.006 0.0 HOH
8.174
O
O
LEU B:77 B:74 1.0 0.006 H -109.7 -16.5 1.0 0.006 0.0 HOH
8.729
N
O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
2015-12-02 LEU A:77 A:74 0.0 0.0 H -98.8 -11.9 0.0 0.0 0.0
LEU B:77 B:74 0.0 0.0 H -95.8 -13.6 0.0 0.0 0.0
LEU C:77 C:74 1.0 0.006 H -98.3 -11.6 NA NA NA
LEU D:77 D:74 2.0 0.012 H -95.8 -11.9 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
2015-12-02 LEU A:77 A:74 1.0 0.006 H -104.7 -21.7 1.0 0.006 0.0 HOH
2.671
O
O
LEU B:77 B:74 2.0 0.012 H -105.0 -25.1 2.0 0.012 0.0 HOH
2.575
O
O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
2015-12-02 LEU A:77 A:74 1.0 0.006 H -91.2 -25.8 1.0 0.006 0.0 HOH
8.505
O
O
LEU B:77 B:74 0.0 0.0 H -90.4 -26.0 0.0 0.0 0.0 HOH
9.321
O
O
3sr2 1 Q13426 100.0 1e-101 X-RAY
2011-07-20 LEU A:79 A:74 12.0 0.071 T -103.7 -63.6 12.0 0.071 0.0
LEU B:79 B:74 13.0 0.076 T -93.6 24.3 13.0 0.076 0.0
LEU E:79 E:74 6.0 0.035 S -108.1 6.7 6.0 0.035 0.0
LEU F:79 F:74 3.0 0.018 S -118.4 9.1 3.0 0.018 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
2010-06-23 LEU A:77 A:74 0.0 0.0 H -98.6 -20.9 0.0 0.0 0.0 HOH
2.635
O
O
LEU B:77 B:74 1.0 0.006 H -102.0 -20.4 1.0 0.006 0.0 HOH
2.728
O
O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
2017-08-09 LEU A:76 A:74 1.0 0.006 H -99.8 -20.7 1.0 0.006 0.0 HOH
4.330
C
O
LEU B:76 B:74 1.0 0.006 H -103.3 -21.3 1.0 0.006 0.0 HOH
2.488
O
O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
2017-08-23 LEU A:76 C:74 3.0 0.018 H -75.7 -51.1 3.0 0.018 0.0
LEU B:76 D:74 1.0 0.006 H -76.3 -6.3 1.0 0.006 0.0
LEU C:76 A:74 0.0 0.0 T -92.6 -15.6 0.0 0.0 0.0
LEU D:76 B:74 2.0 0.012 H -80.1 -11.3 2.0 0.012 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 LEU A:74 A:74 0.0 0.0 H -89.5 -30.7