Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 82406929 | . | G | A | CCDS4058.1:NM_003401.3:c.222ttG>ttA_NP_003392.1:p.74L>L | Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
7lsy | 5 | Q13426 | 99.11 | 0.0 |
EM |
2021-04-14 | LEU | E:74 | F:74 | 0.0 | 0.0 | H | -91.9 | -29.7 | 0.0 | 0.0 | 0.0 | ||||||
LEU | F:74 | G:74 | 13.0 | 0.076 | T | -73.5 | -50.6 | 13.0 | 0.076 | 0.0 | |||||||||||||
LEU | M:74 | O:74 | 12.0 | 0.071 | T | -73.6 | -50.6 | 12.0 | 0.071 | 0.0 | |||||||||||||
LEU | N:74 | P:74 | 1.0 | 0.006 | H | -92.0 | -29.6 | 1.0 | 0.006 | 0.0 | |||||||||||||
7lt3 | 7 | Q13426 | 99.11 | 0.0 |
EM |
2021-04-14 | LEU | G:74 | F:74 | 1.0 | 0.006 | H | -94.9 | -26.0 | 1.0 | 0.006 | 0.0 | ||||||
LEU | H:74 | G:74 | 11.0 | 0.065 | T | -78.7 | -65.6 | 11.0 | 0.065 | 0.0 | |||||||||||||
LEU | Q:74 | O:74 | 12.0 | 0.071 | T | -78.5 | -65.9 | 12.0 | 0.071 | 0.0 | |||||||||||||
LEU | R:74 | P:74 | 0.0 | 0.0 | H | -95.0 | -26.0 | 0.0 | 0.0 | 0.0 | |||||||||||||
7nfc | 4 | Q13426 | 99.11 | 0.0 |
EM |
2021-08-18 | LEU | G:74 | K:74 | 32.0 | 0.188 | H | -86.7 | -43.7 | 32.0 | 0.188 | 0.0 | ||||||
LEU | H:74 | L:74 | 68.0 | 0.4 | H | -70.6 | -37.9 | 68.0 | 0.4 | 0.0 | |||||||||||||
LEU | J:74 | N:74 | 45.0 | 0.265 | H | -65.8 | -37.6 | 45.0 | 0.265 | 0.0 | |||||||||||||
LEU | K:74 | O:74 | 103.0 | 0.606 | T | -106.1 | -54.3 | 103.0 | 0.606 | 0.0 | |||||||||||||
7nfe | 5 | Q13426 | 99.11 | 0.0 |
EM |
2021-08-18 | LEU | F:74 | H:74 | 1.0 | NA | H | -69.0 | -48.3 | 1.0 | NA | NA | ||||||
LEU | G:74 | I:74 | 3.0 | 0.018 | I | -61.8 | -40.5 | 3.0 | 0.018 | 0.0 | |||||||||||||
6abo | 1 | Q13426 | 100.0 | 8e-160 |
X-RAY |
2019-07-31 | LEU | A:88 | A:74 | 0.0 | 0.0 | H | -94.7 | -23.6 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
7.372 5.651 |
O N |
O4 O |
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1ik9 | 1 | Q13426 | 98.12 | 9e-156 |
X-RAY |
2001-11-21 | LEU | A:74 | A:74 | 1.0 | 0.006 | H | -95.8 | -31.0 | 1.0 | 0.006 | 0.0 |
HOH |
3.446 |
O |
O |
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LEU | B:74 | B:74 | 0.0 | 0.0 | H | -98.0 | -26.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.119 |
O |
O |
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1fu1 | 1 | Q13426 | 99.51 | 3e-151 |
X-RAY |
2000-12-11 | LEU | A:74 | A:74 | 2.0 | 0.012 | H | -110.0 | -12.3 | 2.0 | 0.012 | 0.0 |
ACY HOH |
6.255 3.779 |
CD1 C |
CH3 O |
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LEU | B:74 | B:474 | 2.0 | 0.012 | H | -101.4 | -15.6 | 2.0 | 0.012 | 0.0 |
HOH |
3.768 |
C |
O |
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3ii6 | 1 | Q13426 | 99.01 | 2e-150 |
X-RAY |
2009-08-11 | LEU | A:74 | A:74 | 0.0 | 0.0 | H | -89.1 | -13.5 | 0.0 | 0.0 | 0.0 |
HOH |
2.239 |
O |
O |
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LEU | B:74 | B:74 | 7.0 | 0.041 | H | -124.3 | -51.2 | 7.0 | 0.041 | 0.0 |
HOH |
5.286 |
O |
O |
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LEU | C:74 | C:74 | 0.0 | 0.0 | H | -85.4 | -12.3 | NA | NA | NA | |||||||||||||
LEU | D:74 | D:74 | 8.0 | 0.047 | H | -131.4 | -57.9 | NA | NA | NA | |||||||||||||
3w03 | 2 | Q13426 | 100.0 | 8e-122 |
X-RAY |
2012-11-07 | LEU | C:94 | C:74 | 2.0 | 0.012 | H | -110.0 | -12.2 | NA | NA | NA | ||||||
LEU | D:94 | D:74 | 2.0 | 0.012 | H | -101.4 | -15.6 | NA | NA | NA | |||||||||||||
3rwr | 1 | Q13426 | 100.0 | 3e-116 |
X-RAY |
2011-12-07 | LEU | A:74 | A:74 | 29.0 | 0.171 | T | -70.7 | 7.7 | 29.0 | 0.171 | 0.0 | ||||||
LEU | B:74 | B:574 | 13.0 | 0.076 | S | -144.0 | 6.3 | 13.0 | 0.076 | 0.0 | |||||||||||||
LEU | E:74 | F:74 | 3.0 | 0.018 | T | -74.6 | 19.7 | 3.0 | 0.018 | 0.0 | |||||||||||||
LEU | F:74 | G:574 | 2.0 | 0.012 | T | -84.2 | -64.0 | 2.0 | 0.012 | 0.0 | |||||||||||||
LEU | I:74 | J:74 | 17.0 | 0.1 | T | -56.1 | -66.9 | NA | NA | NA | |||||||||||||
LEU | J:74 | K:574 | 27.0 | 0.159 | H | -112.0 | -31.2 | NA | NA | NA | |||||||||||||
LEU | M:74 | N:74 | 6.0 | 0.035 | T | -76.0 | 5.8 | NA | NA | NA | |||||||||||||
LEU | N:74 | P:574 | 8.0 | 0.047 | S | -78.8 | -102.5 | NA | NA | NA | |||||||||||||
LEU | Q:74 | R:74 | 0.0 | 0.0 | T | -82.9 | -27.1 | NA | NA | NA | |||||||||||||
LEU | R:74 | V:574 | 15.0 | 0.088 | T | -103.4 | -74.5 | NA | NA | NA | |||||||||||||
LEU | W:74 | U:74 | 8.0 | 0.047 | T | -105.5 | 5.0 | NA | NA | NA | |||||||||||||
LEU | X:74 | Y:574 | 10.0 | 0.059 | S | -123.1 | 60.8 | NA | NA | NA | |||||||||||||
3q4f | 2 | Q13426 | 100.0 | 3e-116 |
X-RAY |
2011-08-03 | LEU | C:103 | C:74 | 1.0 | 0.006 | H | -95.8 | -29.3 | NA | NA | NA | ||||||
LEU | D:103 | D:74 | 1.0 | 0.006 | H | -96.7 | -27.9 | NA | NA | NA | |||||||||||||
LEU | G:103 | G:74 | 1.0 | 0.006 | H | -96.2 | -29.1 | 1.0 | 0.006 | 0.0 | |||||||||||||
LEU | H:103 | H:74 | 0.0 | 0.0 | H | -97.3 | -27.8 | 0.0 | 0.0 | 0.0 | |||||||||||||
4xa4 | 1 | Q13426,P12883 | 85.8 | 1e-106 |
X-RAY |
2015-07-01 | LEU | A:77 | A:74 | 1.0 | 0.006 | H | -104.0 | -25.2 | 1.0 | 0.006 | 0.0 |
HOH |
8.174 |
O |
O |
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LEU | B:77 | B:74 | 1.0 | 0.006 | H | -109.7 | -16.5 | 1.0 | 0.006 | 0.0 |
HOH |
8.729 |
N |
O |
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5cj4 | 1 | Q13426,P12883 | 86.98 | 8e-105 |
X-RAY |
2015-12-02 | LEU | A:77 | A:74 | 0.0 | 0.0 | H | -98.8 | -11.9 | 0.0 | 0.0 | 0.0 | ||||||
LEU | B:77 | B:74 | 0.0 | 0.0 | H | -95.8 | -13.6 | 0.0 | 0.0 | 0.0 | |||||||||||||
LEU | C:77 | C:74 | 1.0 | 0.006 | H | -98.3 | -11.6 | NA | NA | NA | |||||||||||||
LEU | D:77 | D:74 | 2.0 | 0.012 | H | -95.8 | -11.9 | NA | NA | NA | |||||||||||||
5cj0 | 1 | Q13426,P12883 | 81.87 | 1e-103 |
X-RAY |
2015-12-02 | LEU | A:77 | A:74 | 1.0 | 0.006 | H | -104.7 | -21.7 | 1.0 | 0.006 | 0.0 |
HOH |
2.671 |
O |
O |
||
LEU | B:77 | B:74 | 2.0 | 0.012 | H | -105.0 | -25.1 | 2.0 | 0.012 | 0.0 |
HOH |
2.575 |
O |
O |
|||||||||
5chx | 1 | Q13426,P12883 | 99.3 | 2e-103 |
X-RAY |
2015-12-02 | LEU | A:77 | A:74 | 1.0 | 0.006 | H | -91.2 | -25.8 | 1.0 | 0.006 | 0.0 |
HOH |
8.505 |
O |
O |
||
LEU | B:77 | B:74 | 0.0 | 0.0 | H | -90.4 | -26.0 | 0.0 | 0.0 | 0.0 |
HOH |
9.321 |
O |
O |
|||||||||
3sr2 | 1 | Q13426 | 100.0 | 1e-101 |
X-RAY |
2011-07-20 | LEU | A:79 | A:74 | 12.0 | 0.071 | T | -103.7 | -63.6 | 12.0 | 0.071 | 0.0 | ||||||
LEU | B:79 | B:74 | 13.0 | 0.076 | T | -93.6 | 24.3 | 13.0 | 0.076 | 0.0 | |||||||||||||
LEU | E:79 | E:74 | 6.0 | 0.035 | S | -108.1 | 6.7 | 6.0 | 0.035 | 0.0 | |||||||||||||
LEU | F:79 | F:74 | 3.0 | 0.018 | S | -118.4 | 9.1 | 3.0 | 0.018 | 0.0 | |||||||||||||
3mud | 1 | Q13426,P04268 | 97.81 | 2e-97 |
X-RAY |
2010-06-23 | LEU | A:77 | A:74 | 0.0 | 0.0 | H | -98.6 | -20.9 | 0.0 | 0.0 | 0.0 |
HOH |
2.635 |
O |
O |
||
LEU | B:77 | B:74 | 1.0 | 0.006 | H | -102.0 | -20.4 | 1.0 | 0.006 | 0.0 |
HOH |
2.728 |
O |
O |
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5wj7 | 1 | Q13426,P12883 | 91.78 | 3e-96 |
X-RAY |
2017-08-09 | LEU | A:76 | A:74 | 1.0 | 0.006 | H | -99.8 | -20.7 | 1.0 | 0.006 | 0.0 |
HOH |
4.330 |
C |
O |
||
LEU | B:76 | B:74 | 1.0 | 0.006 | H | -103.3 | -21.3 | 1.0 | 0.006 | 0.0 |
HOH |
2.488 |
O |
O |
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5wlz | 1 | Q13426,P12883 | 85.33 | 1e-86 |
X-RAY |
2017-08-23 | LEU | A:76 | C:74 | 3.0 | 0.018 | H | -75.7 | -51.1 | 3.0 | 0.018 | 0.0 | ||||||
LEU | B:76 | D:74 | 1.0 | 0.006 | H | -76.3 | -6.3 | 1.0 | 0.006 | 0.0 | |||||||||||||
LEU | C:76 | A:74 | 0.0 | 0.0 | T | -92.6 | -15.6 | 0.0 | 0.0 | 0.0 | |||||||||||||
LEU | D:76 | B:74 | 2.0 | 0.012 | H | -80.1 | -11.3 | 2.0 | 0.012 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q13426-f1 | 1 | Q13426 | 99.11 | 0.0 | LEU | A:74 | A:74 | 0.0 | 0.0 | H | -89.5 | -30.7 |