Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82406931 . T A CCDS4058.1:NM_003401.3:c.224tTg>tAg_NP_003392.1:p.75L>* Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
2021-04-14 LEU E:75 F:75 23.0 0.135 S -100.2 23.4 23.0 0.135 0.0
LEU F:75 G:75 35.0 0.206 T -87.8 51.9 35.0 0.206 0.0
LEU M:75 O:75 36.0 0.212 T -87.7 52.0 36.0 0.212 0.0
LEU N:75 P:75 24.0 0.141 S -100.2 23.4 24.0 0.141 0.0
7lt3 7 Q13426 99.11 0.0 EM
2021-04-14 LEU G:75 F:75 23.0 0.135 S -110.3 26.8 23.0 0.135 0.0
LEU H:75 G:75 25.0 0.147 -78.2 39.2 25.0 0.147 0.0
LEU Q:75 O:75 24.0 0.141 -77.9 39.4 24.0 0.141 0.0
LEU R:75 P:75 24.0 0.141 S -110.3 26.5 24.0 0.141 0.0
7nfc 4 Q13426 99.11 0.0 EM
2021-08-18 LEU G:75 K:75 30.0 0.176 H -97.6 7.1 30.0 0.176 0.0
LEU H:75 L:75 95.0 0.559 -94.6 106.2 95.0 0.559 0.0
LEU J:75 N:75 62.0 0.365 S -80.3 -177.5 62.0 0.365 0.0
LEU K:75 O:75 197.0 1.0 -69.5 360.0 197.0 1.0 0.0
7nfe 5 Q13426 99.11 0.0 EM
2021-08-18 LEU F:75 H:75 46.0 0.271 S -79.3 -178.0 46.0 0.271 0.0
LEU G:75 I:75 85.0 0.5 -62.9 360.0 85.0 0.5 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
2019-07-31 LEU A:89 A:75 14.0 0.082 S -105.0 13.4 14.0 0.082 0.0 SO4
HOH
6.138
3.712
O
O
O1
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
2001-11-21 LEU A:75 A:75 31.0 0.182 -99.9 25.4 31.0 0.182 0.0 HOH
3.867
CD1
O
LEU B:75 B:75 16.0 0.094 -102.8 8.0 16.0 0.094 0.0 HOH
3.730
N
O
1fu1 1 Q13426 99.51 3e-151 X-RAY
2000-12-11 LEU A:75 A:75 19.0 0.112 S -123.0 23.8 19.0 0.112 0.0 HOH
3.968
CD1
O
LEU B:75 B:475 19.0 0.112 S -117.1 25.2 19.0 0.112 0.0 HOH
4.101
N
O
3ii6 1 Q13426 99.01 2e-150 X-RAY
2009-08-11 LEU A:75 A:75 25.0 0.147 T -121.5 17.6 25.0 0.147 0.0 HOH
3.484
CD2
O
LEU B:75 B:75 25.0 0.147 -83.8 34.9 25.0 0.147 0.0 HOH
5.230
C
O
LEU C:75 C:75 26.0 0.153 T -126.7 19.0 NA NA NA
LEU D:75 D:75 23.0 0.135 -78.8 37.2 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
2012-11-07 LEU C:95 C:75 20.0 0.118 S -123.0 23.7 NA NA NA
LEU D:95 D:75 19.0 0.112 S -117.1 25.2 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
2011-12-07 LEU A:75 A:75 46.0 0.271 T -132.3 28.6 46.0 0.271 0.0
LEU B:75 B:575 32.0 0.188 -169.6 18.9 32.0 0.188 0.0
LEU E:75 F:75 25.0 0.147 T -144.8 11.2 25.0 0.147 0.0
LEU F:75 G:575 17.0 0.1 S -71.2 13.6 17.0 0.1 0.0
LEU I:75 J:75 20.0 0.118 T -66.2 8.6 NA NA NA
LEU J:75 K:575 4.0 0.024 T -55.0 -17.4 NA NA NA
LEU M:75 N:75 37.0 0.218 T -138.5 14.3 NA NA NA
LEU N:75 P:575 16.0 0.094 T -73.2 55.1 NA NA NA
LEU Q:75 R:75 19.0 0.112 S -106.0 -5.3 NA NA NA
LEU R:75 V:575 14.0 0.082 T -53.2 -44.7 NA NA NA
LEU W:75 U:75 38.0 0.224 T -126.3 20.8 NA NA NA
LEU X:75 Y:575 40.0 0.235 S -153.8 24.3 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
2011-08-03 LEU C:104 C:75 23.0 0.135 S -101.6 21.6 NA NA NA
LEU D:104 D:75 24.0 0.141 S -102.3 18.7 NA NA NA
LEU G:104 G:75 28.0 0.165 S -102.0 21.9 28.0 0.165 0.0
LEU H:104 H:75 28.0 0.165 S -102.8 18.9 28.0 0.165 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
2015-07-01 LEU A:78 A:75 27.0 0.159 S -112.9 -106.2 27.0 0.159 0.0 HOH
6.937
O
O
LEU B:78 B:75 33.0 0.194 S -124.5 -104.0 33.0 0.194 0.0 HOH
7.504
O
O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
2015-12-02 LEU A:78 A:75 32.0 0.188 S -123.1 17.2 32.0 0.188 0.0
LEU B:78 B:75 31.0 0.182 T -123.4 17.2 31.0 0.182 0.0
LEU C:78 C:75 36.0 0.212 -122.2 16.2 NA NA NA
LEU D:78 D:75 26.0 0.153 -123.1 16.0 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
2015-12-02 LEU A:78 A:75 27.0 0.159 S -108.1 -10.5 27.0 0.159 0.0 HOH
4.125
CA
O
LEU B:78 B:75 20.0 0.118 T -111.5 -12.0 20.0 0.118 0.0 HOH
4.022
CA
O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
2015-12-02 LEU A:78 A:75 22.0 0.129 T -104.1 13.9 22.0 0.129 0.0 HOH
7.113
O
O
LEU B:78 B:75 15.0 0.088 T -105.5 15.1 15.0 0.088 0.0 HOH
6.927
CD1
O
3sr2 1 Q13426 100.0 1e-101 X-RAY
2011-07-20 LEU A:80 A:75 19.0 0.112 T -72.7 39.0 19.0 0.112 0.0
LEU B:80 B:75 23.0 0.135 T -150.9 28.9 23.0 0.135 0.0
LEU E:80 E:75 24.0 0.141 S -125.9 30.9 24.0 0.141 0.0
LEU F:80 F:75 23.0 0.135 S -127.7 27.3 23.0 0.135 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
2010-06-23 LEU A:78 A:75 21.0 0.124 T -112.7 24.1 21.0 0.124 0.0 HOH
3.748
N
O
LEU B:78 B:75 22.0 0.129 S -111.3 14.6 22.0 0.129 0.0 HOH
3.441
O
O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
2017-08-09 LEU A:77 A:75 18.0 0.106 T -106.2 12.3 18.0 0.106 0.0 HOH
4.518
C
O
LEU B:77 B:75 19.0 0.112 S -110.5 16.6 19.0 0.112 0.0 HOH
2.781
O
O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
2017-08-23 LEU A:77 C:75 13.0 0.076 T -85.2 124.1 13.0 0.076 0.0
LEU B:77 D:75 9.0 0.053 S -129.5 149.1 9.0 0.053 0.0
LEU C:77 A:75 25.0 0.147 S -113.2 -34.0 25.0 0.147 0.0
LEU D:77 B:75 11.0 0.065 T -120.4 16.3 11.0 0.065 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 LEU A:75 A:75 22.0 0.129 T -98.4 14.4