Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 82406931 | . | T | A | CCDS4058.1:NM_003401.3:c.224tTg>tAg_NP_003392.1:p.75L>* | Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
7lsy | 5 | Q13426 | 99.11 | 0.0 |
EM |
2021-04-14 | LEU | E:75 | F:75 | 23.0 | 0.135 | S | -100.2 | 23.4 | 23.0 | 0.135 | 0.0 | ||||||
LEU | F:75 | G:75 | 35.0 | 0.206 | T | -87.8 | 51.9 | 35.0 | 0.206 | 0.0 | |||||||||||||
LEU | M:75 | O:75 | 36.0 | 0.212 | T | -87.7 | 52.0 | 36.0 | 0.212 | 0.0 | |||||||||||||
LEU | N:75 | P:75 | 24.0 | 0.141 | S | -100.2 | 23.4 | 24.0 | 0.141 | 0.0 | |||||||||||||
7lt3 | 7 | Q13426 | 99.11 | 0.0 |
EM |
2021-04-14 | LEU | G:75 | F:75 | 23.0 | 0.135 | S | -110.3 | 26.8 | 23.0 | 0.135 | 0.0 | ||||||
LEU | H:75 | G:75 | 25.0 | 0.147 | -78.2 | 39.2 | 25.0 | 0.147 | 0.0 | ||||||||||||||
LEU | Q:75 | O:75 | 24.0 | 0.141 | -77.9 | 39.4 | 24.0 | 0.141 | 0.0 | ||||||||||||||
LEU | R:75 | P:75 | 24.0 | 0.141 | S | -110.3 | 26.5 | 24.0 | 0.141 | 0.0 | |||||||||||||
7nfc | 4 | Q13426 | 99.11 | 0.0 |
EM |
2021-08-18 | LEU | G:75 | K:75 | 30.0 | 0.176 | H | -97.6 | 7.1 | 30.0 | 0.176 | 0.0 | ||||||
LEU | H:75 | L:75 | 95.0 | 0.559 | -94.6 | 106.2 | 95.0 | 0.559 | 0.0 | ||||||||||||||
LEU | J:75 | N:75 | 62.0 | 0.365 | S | -80.3 | -177.5 | 62.0 | 0.365 | 0.0 | |||||||||||||
LEU | K:75 | O:75 | 197.0 | 1.0 | -69.5 | 360.0 | 197.0 | 1.0 | 0.0 | ||||||||||||||
7nfe | 5 | Q13426 | 99.11 | 0.0 |
EM |
2021-08-18 | LEU | F:75 | H:75 | 46.0 | 0.271 | S | -79.3 | -178.0 | 46.0 | 0.271 | 0.0 | ||||||
LEU | G:75 | I:75 | 85.0 | 0.5 | -62.9 | 360.0 | 85.0 | 0.5 | 0.0 | ||||||||||||||
6abo | 1 | Q13426 | 100.0 | 8e-160 |
X-RAY |
2019-07-31 | LEU | A:89 | A:75 | 14.0 | 0.082 | S | -105.0 | 13.4 | 14.0 | 0.082 | 0.0 |
SO4 HOH |
6.138 3.712 |
O O |
O1 O |
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1ik9 | 1 | Q13426 | 98.12 | 9e-156 |
X-RAY |
2001-11-21 | LEU | A:75 | A:75 | 31.0 | 0.182 | -99.9 | 25.4 | 31.0 | 0.182 | 0.0 |
HOH |
3.867 |
CD1 |
O |
|||
LEU | B:75 | B:75 | 16.0 | 0.094 | -102.8 | 8.0 | 16.0 | 0.094 | 0.0 |
HOH |
3.730 |
N |
O |
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1fu1 | 1 | Q13426 | 99.51 | 3e-151 |
X-RAY |
2000-12-11 | LEU | A:75 | A:75 | 19.0 | 0.112 | S | -123.0 | 23.8 | 19.0 | 0.112 | 0.0 |
HOH |
3.968 |
CD1 |
O |
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LEU | B:75 | B:475 | 19.0 | 0.112 | S | -117.1 | 25.2 | 19.0 | 0.112 | 0.0 |
HOH |
4.101 |
N |
O |
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3ii6 | 1 | Q13426 | 99.01 | 2e-150 |
X-RAY |
2009-08-11 | LEU | A:75 | A:75 | 25.0 | 0.147 | T | -121.5 | 17.6 | 25.0 | 0.147 | 0.0 |
HOH |
3.484 |
CD2 |
O |
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LEU | B:75 | B:75 | 25.0 | 0.147 | -83.8 | 34.9 | 25.0 | 0.147 | 0.0 |
HOH |
5.230 |
C |
O |
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LEU | C:75 | C:75 | 26.0 | 0.153 | T | -126.7 | 19.0 | NA | NA | NA | |||||||||||||
LEU | D:75 | D:75 | 23.0 | 0.135 | -78.8 | 37.2 | NA | NA | NA | ||||||||||||||
3w03 | 2 | Q13426 | 100.0 | 8e-122 |
X-RAY |
2012-11-07 | LEU | C:95 | C:75 | 20.0 | 0.118 | S | -123.0 | 23.7 | NA | NA | NA | ||||||
LEU | D:95 | D:75 | 19.0 | 0.112 | S | -117.1 | 25.2 | NA | NA | NA | |||||||||||||
3rwr | 1 | Q13426 | 100.0 | 3e-116 |
X-RAY |
2011-12-07 | LEU | A:75 | A:75 | 46.0 | 0.271 | T | -132.3 | 28.6 | 46.0 | 0.271 | 0.0 | ||||||
LEU | B:75 | B:575 | 32.0 | 0.188 | -169.6 | 18.9 | 32.0 | 0.188 | 0.0 | ||||||||||||||
LEU | E:75 | F:75 | 25.0 | 0.147 | T | -144.8 | 11.2 | 25.0 | 0.147 | 0.0 | |||||||||||||
LEU | F:75 | G:575 | 17.0 | 0.1 | S | -71.2 | 13.6 | 17.0 | 0.1 | 0.0 | |||||||||||||
LEU | I:75 | J:75 | 20.0 | 0.118 | T | -66.2 | 8.6 | NA | NA | NA | |||||||||||||
LEU | J:75 | K:575 | 4.0 | 0.024 | T | -55.0 | -17.4 | NA | NA | NA | |||||||||||||
LEU | M:75 | N:75 | 37.0 | 0.218 | T | -138.5 | 14.3 | NA | NA | NA | |||||||||||||
LEU | N:75 | P:575 | 16.0 | 0.094 | T | -73.2 | 55.1 | NA | NA | NA | |||||||||||||
LEU | Q:75 | R:75 | 19.0 | 0.112 | S | -106.0 | -5.3 | NA | NA | NA | |||||||||||||
LEU | R:75 | V:575 | 14.0 | 0.082 | T | -53.2 | -44.7 | NA | NA | NA | |||||||||||||
LEU | W:75 | U:75 | 38.0 | 0.224 | T | -126.3 | 20.8 | NA | NA | NA | |||||||||||||
LEU | X:75 | Y:575 | 40.0 | 0.235 | S | -153.8 | 24.3 | NA | NA | NA | |||||||||||||
3q4f | 2 | Q13426 | 100.0 | 3e-116 |
X-RAY |
2011-08-03 | LEU | C:104 | C:75 | 23.0 | 0.135 | S | -101.6 | 21.6 | NA | NA | NA | ||||||
LEU | D:104 | D:75 | 24.0 | 0.141 | S | -102.3 | 18.7 | NA | NA | NA | |||||||||||||
LEU | G:104 | G:75 | 28.0 | 0.165 | S | -102.0 | 21.9 | 28.0 | 0.165 | 0.0 | |||||||||||||
LEU | H:104 | H:75 | 28.0 | 0.165 | S | -102.8 | 18.9 | 28.0 | 0.165 | 0.0 | |||||||||||||
4xa4 | 1 | Q13426,P12883 | 85.8 | 1e-106 |
X-RAY |
2015-07-01 | LEU | A:78 | A:75 | 27.0 | 0.159 | S | -112.9 | -106.2 | 27.0 | 0.159 | 0.0 |
HOH |
6.937 |
O |
O |
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LEU | B:78 | B:75 | 33.0 | 0.194 | S | -124.5 | -104.0 | 33.0 | 0.194 | 0.0 |
HOH |
7.504 |
O |
O |
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5cj4 | 1 | Q13426,P12883 | 86.98 | 8e-105 |
X-RAY |
2015-12-02 | LEU | A:78 | A:75 | 32.0 | 0.188 | S | -123.1 | 17.2 | 32.0 | 0.188 | 0.0 | ||||||
LEU | B:78 | B:75 | 31.0 | 0.182 | T | -123.4 | 17.2 | 31.0 | 0.182 | 0.0 | |||||||||||||
LEU | C:78 | C:75 | 36.0 | 0.212 | -122.2 | 16.2 | NA | NA | NA | ||||||||||||||
LEU | D:78 | D:75 | 26.0 | 0.153 | -123.1 | 16.0 | NA | NA | NA | ||||||||||||||
5cj0 | 1 | Q13426,P12883 | 81.87 | 1e-103 |
X-RAY |
2015-12-02 | LEU | A:78 | A:75 | 27.0 | 0.159 | S | -108.1 | -10.5 | 27.0 | 0.159 | 0.0 |
HOH |
4.125 |
CA |
O |
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LEU | B:78 | B:75 | 20.0 | 0.118 | T | -111.5 | -12.0 | 20.0 | 0.118 | 0.0 |
HOH |
4.022 |
CA |
O |
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5chx | 1 | Q13426,P12883 | 99.3 | 2e-103 |
X-RAY |
2015-12-02 | LEU | A:78 | A:75 | 22.0 | 0.129 | T | -104.1 | 13.9 | 22.0 | 0.129 | 0.0 |
HOH |
7.113 |
O |
O |
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LEU | B:78 | B:75 | 15.0 | 0.088 | T | -105.5 | 15.1 | 15.0 | 0.088 | 0.0 |
HOH |
6.927 |
CD1 |
O |
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3sr2 | 1 | Q13426 | 100.0 | 1e-101 |
X-RAY |
2011-07-20 | LEU | A:80 | A:75 | 19.0 | 0.112 | T | -72.7 | 39.0 | 19.0 | 0.112 | 0.0 | ||||||
LEU | B:80 | B:75 | 23.0 | 0.135 | T | -150.9 | 28.9 | 23.0 | 0.135 | 0.0 | |||||||||||||
LEU | E:80 | E:75 | 24.0 | 0.141 | S | -125.9 | 30.9 | 24.0 | 0.141 | 0.0 | |||||||||||||
LEU | F:80 | F:75 | 23.0 | 0.135 | S | -127.7 | 27.3 | 23.0 | 0.135 | 0.0 | |||||||||||||
3mud | 1 | Q13426,P04268 | 97.81 | 2e-97 |
X-RAY |
2010-06-23 | LEU | A:78 | A:75 | 21.0 | 0.124 | T | -112.7 | 24.1 | 21.0 | 0.124 | 0.0 |
HOH |
3.748 |
N |
O |
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LEU | B:78 | B:75 | 22.0 | 0.129 | S | -111.3 | 14.6 | 22.0 | 0.129 | 0.0 |
HOH |
3.441 |
O |
O |
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5wj7 | 1 | Q13426,P12883 | 91.78 | 3e-96 |
X-RAY |
2017-08-09 | LEU | A:77 | A:75 | 18.0 | 0.106 | T | -106.2 | 12.3 | 18.0 | 0.106 | 0.0 |
HOH |
4.518 |
C |
O |
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LEU | B:77 | B:75 | 19.0 | 0.112 | S | -110.5 | 16.6 | 19.0 | 0.112 | 0.0 |
HOH |
2.781 |
O |
O |
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5wlz | 1 | Q13426,P12883 | 85.33 | 1e-86 |
X-RAY |
2017-08-23 | LEU | A:77 | C:75 | 13.0 | 0.076 | T | -85.2 | 124.1 | 13.0 | 0.076 | 0.0 | ||||||
LEU | B:77 | D:75 | 9.0 | 0.053 | S | -129.5 | 149.1 | 9.0 | 0.053 | 0.0 | |||||||||||||
LEU | C:77 | A:75 | 25.0 | 0.147 | S | -113.2 | -34.0 | 25.0 | 0.147 | 0.0 | |||||||||||||
LEU | D:77 | B:75 | 11.0 | 0.065 | T | -120.4 | 16.3 | 11.0 | 0.065 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q13426-f1 | 1 | Q13426 | 99.11 | 0.0 | LEU | A:75 | A:75 | 22.0 | 0.129 | T | -98.4 | 14.4 |