Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82406953 . T A CCDS4058.1:NM_003401.3:c.246gaT>gaA_NP_003392.1:p.82D>E Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ASP E:82 F:82 53.0 0.353 -85.7 124.5 53.0 0.353 0.0
ASP F:82 NA:NA DO NA DO DO DO NA NA NA
ASP M:82 NA:NA DO NA DO DO DO NA NA NA
ASP N:82 P:82 51.0 0.34 -85.6 124.5 51.0 0.34 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ASP G:82 F:82 46.0 0.307 -84.0 125.9 46.0 0.307 0.0
ASP H:82 NA:NA DO NA DO DO DO NA NA NA
ASP Q:82 NA:NA DO NA DO DO DO NA NA NA
ASP R:82 P:82 46.0 0.307 -83.9 125.8 46.0 0.307 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ASP G:82 K:82 108.0 0.72 S -117.1 123.9 108.0 0.72 0.0
ASP H:82 NA:NA DO NA DO DO DO NA NA NA
ASP J:82 N:82 74.0 0.493 S -90.0 105.6 74.0 0.493 0.0
ASP K:82 NA:NA DO NA DO DO DO NA NA NA
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ASP F:82 H:82 5.0 0.033 T -130.6 88.4 5.0 0.033 0.0
ASP G:82 NA:NA DO NA DO DO DO NA NA NA
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ASP A:96 A:82 54.0 0.36 -77.9 106.1 54.0 0.36 0.0 GOL
HOH
 7.028
3.012
 OD1
OD1
 O2
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ASP A:82 A:82 70.0 0.467 -103.5 106.0 70.0 0.467 0.0 HOH
 4.563
 O
 O
ASP B:82 NA:NA DO NA DO DO DO NA NA NA
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ASP A:82 A:82 43.0 0.287 -44.8 136.6 43.0 0.287 0.0 ACY
HOH
 8.317
4.278
 OD1
O
 CH3
O
ASP B:82 B:482 51.0 0.34 -67.9 126.9 51.0 0.34 0.0 HOH
 3.042
 O
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ASP A:82 A:82 31.0 0.207 -36.7 114.7 31.0 0.207 0.0 HOH
 3.399
 O
 O
ASP B:82 B:82 199.0 1.0 360.0 52.1 199.0 1.0 0.0 HOH
 2.330
 OD1
 O
ASP C:82 C:82 29.0 0.193 -40.5 119.8 NA NA NA
ASP D:82 NA:NA DO NA DO DO DO NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ASP C:102 C:82 42.0 0.28 -44.7 136.7 NA NA NA
ASP D:102 D:82 50.0 0.333 -68.0 126.9 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ASP A:82 A:82 52.0 0.347 -61.7 106.7 52.0 0.347 0.0
ASP B:82 B:582 204.0 1.0 360.0 -36.3 204.0 1.0 0.0
ASP E:82 F:82 68.0 0.453 -62.1 158.0 68.0 0.453 0.0
ASP F:82 G:582 49.0 0.327 -74.3 108.0 49.0 0.327 0.0
ASP I:82 J:82 27.0 0.18 -96.8 23.3 NA NA NA
ASP J:82 K:582 116.0 0.773 59.1 174.7 NA NA NA
ASP M:82 N:82 24.0 0.16 S -160.5 63.9 NA NA NA
ASP N:82 P:582 142.0 0.947 S 67.6 -15.2 NA NA NA
ASP Q:82 R:82 43.0 0.287 -103.1 134.9 NA NA NA
ASP R:82 V:582 156.0 1.0 S -95.9 -18.1 NA NA NA
ASP W:82 U:82 62.0 0.413 S -162.9 143.6 NA NA NA
ASP X:82 Y:582 58.0 0.387 T -70.0 28.0 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ASP C:111 C:82 33.0 0.22 -100.2 103.1 NA NA NA
ASP D:111 D:82 33.0 0.22 -99.6 102.5 NA NA NA
ASP G:111 G:82 33.0 0.22 -99.8 102.6 33.0 0.22 0.0
ASP H:111 H:82 34.0 0.227 -99.6 102.8 34.0 0.227 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 ASP A:85 A:82 42.0 0.28 -80.9 121.9 42.0 0.28 0.0 HOH
 2.602
 OD2
 O
ASP B:85 B:82 43.0 0.287 -77.8 125.5 43.0 0.287 0.0 HOH
 3.540
 O
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 ASP A:85 A:82 191.0 1.0 360.0 -104.9 191.0 1.0 0.0
ASP B:85 B:82 51.0 0.34 -116.6 84.2 51.0 0.34 0.0
ASP C:85 C:82 204.0 1.0 360.0 173.7 NA NA NA
ASP D:85 NA:NA DO NA DO DO DO NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 ASP A:85 A:82 111.0 0.74 54.9 37.1 111.0 0.74 0.0 HOH
 3.142
 OD1
 O
ASP B:85 B:82 135.0 0.9 T 54.7 32.4 135.0 0.9 0.0 HOH
 3.347
 OD1
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 ASP A:85 A:82 180.0 1.0 360.0 -66.7 180.0 1.0 0.0 HOH
 3.100
 N
 O
ASP B:85 NA:NA DO NA DO DO DO NA NA NA
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ASP A:87 A:82 24.0 0.16 14.2 87.2 24.0 0.16 0.0
ASP B:87 B:82 40.0 0.267 -72.2 139.0 40.0 0.267 0.0
ASP E:87 E:82 36.0 0.24 -31.8 128.5 36.0 0.24 0.0
ASP F:87 F:82 45.0 0.3 -17.2 134.1 45.0 0.3 0.0
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 ASP A:85 A:82 24.0 0.16 -100.6 109.0 24.0 0.16 0.0 HOH
 2.782
 O
 O
ASP B:85 B:82 35.0 0.233 -123.7 125.3 35.0 0.233 0.0 HOH
 3.092
 OD1
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 ASP A:84 A:82 54.0 0.36 -102.2 143.1 54.0 0.36 0.0 HOH
 8.864
 O
 O
ASP B:84 B:82 37.0 0.247 -136.9 121.1 37.0 0.247 0.0 HOH
 3.440
 CA
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 ASP A:84 C:82 16.0 0.107 E -110.0 128.9 16.0 0.107 0.0
ASP B:84 D:82 159.0 1.0 68.7 -7.7 159.0 1.0 0.0
ASP C:84 A:82 137.0 0.913 T -79.1 3.3 72.0 0.48 0.433 A:Q13426+P12883:0.433
ASP D:84 B:82 18.0 0.12 S -107.6 138.5 18.0 0.12 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ASP A:82 A:82 35.0 0.233 -91.7 108.6