Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82407014 . G A CCDS4058.1:NM_003401.3:c.307Gat>Aat_NP_003392.1:p.103D>N Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ASP E:103 F:103 177.0 1.0 T 58.3 17.7 177.0 1.0 0.0
ASP F:103 G:103 156.0 1.0 S 65.1 9.0 156.0 1.0 0.0
ASP M:103 O:103 156.0 1.0 S 65.1 9.1 156.0 1.0 0.0
ASP N:103 P:103 177.0 1.0 T 57.9 23.2 177.0 1.0 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ASP G:103 F:103 174.0 1.0 T 62.9 32.1 174.0 1.0 0.0
ASP H:103 G:103 160.0 1.0 S 57.5 13.3 160.0 1.0 0.0
ASP Q:103 O:103 161.0 1.0 S 57.1 13.8 161.0 1.0 0.0
ASP R:103 P:103 172.0 1.0 T 63.0 32.0 172.0 1.0 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ASP G:103 K:103 150.0 1.0 S 57.1 48.3 145.0 0.967 0.033 N:Q9H9Q4:0.033
ASP H:103 L:103 167.0 1.0 S 61.5 12.6 167.0 1.0 0.0
ASP J:103 N:103 161.0 1.0 T 42.1 48.2 161.0 1.0 0.0
ASP K:103 O:103 173.0 1.0 T 67.2 -0.4 173.0 1.0 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ASP F:103 H:103 161.0 1.0 G 51.9 64.4 161.0 1.0 0.0
ASP G:103 I:103 165.0 1.0 T 58.6 33.1 165.0 1.0 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ASP A:117 A:103 142.0 0.947 S -127.7 -8.4 142.0 0.947 0.0 GOL
HOH
 8.292
4.281
 OD1
O
 O3
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ASP A:103 A:103 166.0 1.0 S 63.8 -10.5 166.0 1.0 0.0 HOH
 3.946
 O
 O
ASP B:103 B:103 148.0 0.987 T 80.0 -0.2 148.0 0.987 0.0 HOH
 4.317
 N
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ASP A:103 A:103 150.0 1.0 T 84.7 -13.2 150.0 1.0 0.0 HOH
 3.184
 O
 O
ASP B:103 B:503 161.0 1.0 T 70.7 -2.2 161.0 1.0 0.0
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ASP A:103 A:103 169.0 1.0 S 52.3 16.7 169.0 1.0 0.0 HOH
 4.203
 O
 O
ASP B:103 B:103 159.0 1.0 S 60.1 -2.8 159.0 1.0 0.0
ASP C:103 C:103 172.0 1.0 T 63.4 13.4 NA NA NA
ASP D:103 D:103 160.0 1.0 S 65.8 -11.3 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ASP C:123 C:103 148.0 0.987 T 84.8 -13.2 NA NA NA
ASP D:123 D:103 159.0 1.0 T 70.9 -2.3 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ASP A:103 A:103 167.0 1.0 S 58.4 0.7 116.0 0.773 0.227 D:Q9H9Q4:0.34
ASP B:103 B:603 156.0 1.0 S 67.1 -64.5 88.0 0.587 0.413 G:Q9H9Q4:0.453
ASP E:103 F:103 148.0 0.987 S 58.0 25.1 117.0 0.78 0.207 H:Q9H9Q4:0.207
ASP F:103 G:603 163.0 1.0 T 69.3 -24.3 163.0 1.0 0.0
ASP I:103 J:103 148.0 0.987 S 45.5 16.9 NA NA NA
ASP J:103 K:603 132.0 0.88 S -53.6 -87.4 NA NA NA
ASP M:103 N:103 163.0 1.0 S 63.5 27.4 NA NA NA
ASP N:103 P:603 157.0 1.0 S 61.7 14.1 NA NA NA
ASP Q:103 R:103 166.0 1.0 S 63.8 -86.0 NA NA NA
ASP R:103 V:603 163.0 1.0 S 73.1 -69.1 NA NA NA
ASP W:103 U:103 156.0 1.0 T 64.0 -7.6 NA NA NA
ASP X:103 Y:603 151.0 1.0 T 41.5 26.3 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ASP C:132 C:103 176.0 1.0 S 59.4 3.3 NA NA NA
ASP D:132 D:103 174.0 1.0 S 55.1 14.5 NA NA NA
ASP G:132 G:103 174.0 1.0 S 56.1 7.9 174.0 1.0 0.0
ASP H:132 H:103 174.0 1.0 S 57.3 13.1 166.0 1.0 0.0 F:Q9H9Q4:0.053
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 ASP A:106 A:103 121.0 0.807 S -132.0 -54.2 121.0 0.807 0.0
ASP B:106 B:103 161.0 1.0 T 71.3 2.9 161.0 1.0 0.0 HOH
 9.378
 N
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 ASP A:106 A:103 175.0 1.0 T 72.5 27.5 175.0 1.0 0.0
ASP B:106 B:103 155.0 1.0 T 66.1 25.5 155.0 1.0 0.0
ASP C:106 C:103 157.0 1.0 S -120.1 21.4 NA NA NA
ASP D:106 D:103 173.0 1.0 T 66.7 22.1 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 ASP A:106 A:103 154.0 1.0 T 69.1 11.7 154.0 1.0 0.0 HOH
 9.778
 C
 O
ASP B:106 B:103 173.0 1.0 T 70.7 10.6 173.0 1.0 0.0 HOH
 9.654
 C
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 ASP A:106 A:103 153.0 1.0 S -116.3 -20.8 153.0 1.0 0.0 HOH
 6.826
 C
 O
ASP B:106 B:103 127.0 0.847 S -117.9 -14.8 127.0 0.847 0.0 HOH
 5.178
 O
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ASP A:108 A:103 152.0 1.0 S -53.9 100.4 152.0 1.0 0.0
ASP B:108 B:103 112.0 0.747 S -29.6 140.4 106.0 0.707 0.04 C:Q9H9Q4:0.04
ASP E:108 E:103 159.0 1.0 S 57.8 54.9 159.0 1.0 0.0
ASP F:108 F:103 169.0 1.0 T 85.6 -15.6 152.0 1.0 0.0 G:Q9H9Q4:0.113
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 ASP A:106 A:103 142.0 0.947 S -110.4 -17.2 142.0 0.947 0.0 HOH
 2.539
 OD1
 O
ASP B:106 B:103 147.0 0.98 S -115.4 -7.0 147.0 0.98 0.0 HOH
 2.611
 OD2
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 ASP A:105 A:103 166.0 1.0 S 57.6 32.9 166.0 1.0 0.0
ASP B:105 B:103 163.0 1.0 T -112.3 20.9 163.0 1.0 0.0 HOH
 2.789
 OD2
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 ASP A:105 C:103 143.0 0.953 G 55.3 54.3 143.0 0.953 0.0
ASP B:105 D:103 150.0 1.0 S -122.2 14.3 150.0 1.0 0.0
ASP C:105 A:103 169.0 1.0 T 58.9 25.3 169.0 1.0 0.0
ASP D:105 B:103 113.0 0.753 S -144.2 -86.7 113.0 0.753 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ASP A:103 A:103 162.0 1.0 T -108.0 -1.4