Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82491674 . T A CCDS4058.1:NM_003401.3:c.401aTt>aAt_NP_003392.1:p.134I>N Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ILE E:134 F:134 113.0 0.646 H -63.2 -47.8 29.0 0.166 0.48 F:Q13426:0.48
ILE F:134 G:134 104.0 0.594 H -60.9 -48.9 37.0 0.211 0.383 E:Q13426:0.383
ILE M:134 O:134 101.0 0.577 H -55.7 -50.9 31.0 0.177 0.4 N:Q13426:0.4
ILE N:134 P:134 118.0 0.674 H -51.1 -60.0 32.0 0.183 0.491 M:Q13426:0.491
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ILE G:134 F:134 121.0 0.691 H -64.2 -45.2 29.0 0.166 0.525 H:Q13426:0.526
ILE H:134 G:134 83.0 0.474 H -60.1 -54.4 13.0 0.074 0.4 G:Q13426:0.4
ILE Q:134 O:134 85.0 0.486 H -60.5 -54.2 13.0 0.074 0.412 R:Q13426:0.411
ILE R:134 P:134 121.0 0.691 H -63.9 -45.2 28.0 0.16 0.531 Q:Q13426:0.531
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ILE G:134 K:134 48.0 NA H -63.0 -42.0 15.0 NA NA H:Q13426:NA
ILE H:134 L:134 50.0 NA H -61.3 -45.4 26.0 NA NA G:Q13426:NA
ILE J:134 N:134 54.0 NA H -61.5 -45.1 24.0 NA NA K:Q13426:NA
ILE K:134 O:134 33.0 NA H -61.4 -49.0 16.0 NA NA J:Q13426:NA
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ILE F:134 H:134 46.0 NA H -60.9 -44.7 6.0 NA NA G:Q13426:NA
ILE G:134 I:134 36.0 NA H -59.9 -46.5 5.0 NA NA F:Q13426:NA
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ILE A:148 A:134 80.0 0.457 H -61.5 -41.1 21.0 0.12 0.337 A:Q13426:0.337
 SO4
HOH
 8.290
3.600
 CB
CG2
 O2
O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ILE A:134 A:134 90.0 0.514 H -57.9 -37.2 16.0 0.091 0.423 B:Q13426:0.423
 HOH
 3.254
 CA
 O
ILE B:134 B:134 107.0 0.611 H -62.5 -37.4 35.0 0.2 0.411 A:Q13426:0.411
 HOH
 2.890
 O
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 THR A:134 A:134 66.0 0.471 H -52.9 -37.5 23.0 0.164 0.307 B:Q13426:0.307
 HOH
 3.711
 CA
 O
THR B:134 B:534 80.0 0.571 H -57.9 -46.7 31.0 0.221 0.35 A:Q13426:0.35
 HOH
 4.113
 CA
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 THR A:134 A:134 85.0 0.607 H -58.8 -34.4 17.0 0.121 0.486 B:Q13426:0.486
THR B:134 B:134 56.0 0.4 H -63.6 -43.5 9.0 0.064 0.336 A:Q13426:0.336
THR C:134 C:134 86.0 0.614 H -59.9 -35.6 NA NA NA
THR D:134 D:134 59.0 0.421 H -66.3 -35.9 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ILE C:154 C:134 106.0 0.606 H -52.9 -37.5 NA NA NA
ILE D:154 D:134 116.0 0.663 H -58.0 -46.7 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ILE A:134 A:134 48.0 NA H -60.3 -40.9 7.0 NA NA B:Q13426:NA
ILE B:134 B:634 69.0 NA I -100.8 -60.6 7.0 NA NA A:Q13426:NA
ILE E:134 F:134 56.0 NA H -72.0 -24.1 7.0 NA NA F:Q13426:NA
ILE F:134 G:634 67.0 NA H -78.4 -24.5 8.0 NA NA E:Q13426:NA
ILE I:134 J:134 77.0 NA H -73.2 -27.0 NA NA NA
ILE J:134 K:634 57.0 NA H -65.6 -45.1 NA NA NA
ILE M:134 N:134 48.0 NA H -58.0 -54.5 NA NA NA
ILE N:134 P:634 61.0 NA H -65.7 -35.6 NA NA NA
ILE Q:134 R:134 54.0 NA H -61.2 -25.7 NA NA NA
ILE R:134 V:634 57.0 NA H -70.7 -49.2 NA NA NA
ILE W:134 U:134 62.0 NA H -62.8 -27.9 NA NA NA
ILE X:134 Y:634 66.0 NA H -77.4 -37.4 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ILE C:163 C:134 90.0 0.514 H -57.9 -39.4 NA NA NA
ILE D:163 D:134 89.0 0.509 H -59.2 -39.7 NA NA NA
ILE G:163 G:134 92.0 0.526 H -57.8 -39.6 16.0 0.091 0.435 H:Q13426:0.434
ILE H:163 H:134 90.0 0.514 H -58.7 -40.1 14.0 0.08 0.434 G:Q13426:0.434
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 THR A:137 A:134 71.0 0.507 H -65.6 -47.3 12.0 0.086 0.421 B:Q13426+P12883:0.421
 HOH
 3.741
 CG2
 O
THR B:137 B:134 91.0 0.65 H -57.9 -48.4 24.0 0.171 0.479 A:Q13426+P12883:0.479
 HOH
 5.097
 O
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 THR A:137 A:134 73.0 0.521 H -64.7 -36.5 13.0 0.093 0.428 B:Q13426+P12883:0.429
THR B:137 B:134 89.0 0.636 H -63.0 -38.0 22.0 0.157 0.479 A:Q13426+P12883:0.479
THR C:137 C:134 84.0 0.6 H -63.3 -38.5 NA NA NA
THR D:137 D:134 79.0 0.564 H -64.7 -37.7 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 THR A:137 A:134 75.0 0.536 H -57.2 -48.6 14.0 0.1 0.436 B:Q13426+P12883:0.436
 HOH
 2.213
 OG1
 O
THR B:137 B:134 70.0 0.5 H -57.4 -48.3 9.0 0.064 0.436 A:Q13426+P12883:0.436
 HOH
 2.639
 OG1
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 THR A:137 A:134 78.0 0.557 H -59.9 -40.5 13.0 0.093 0.464 B:Q13426+P12883:0.464
 HOH
 3.388
 CG2
 O
THR B:137 B:134 88.0 0.629 H -60.0 -40.5 19.0 0.136 0.493 A:Q13426+P12883:0.493
 HOH
 3.623
 CG2
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ILE A:139 A:134 110.0 0.629 H -61.1 -37.9 50.0 0.286 0.343 B:Q13426:0.343
ILE B:139 B:134 112.0 0.64 H -43.4 -27.9 31.0 0.177 0.463 A:Q13426:0.463
ILE E:139 E:134 106.0 0.606 H -50.7 -38.8 43.0 0.246 0.36 F:Q13426:0.36
ILE F:139 F:134 121.0 0.691 H -84.0 -24.5 31.0 0.177 0.514 E:Q13426:0.514
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 THR A:137 A:134 68.0 0.486 H -63.0 -43.4 20.0 0.143 0.343 B:Q13426+P04268:0.343
 HOH
 2.681
 OG1
 O
THR B:137 B:134 68.0 0.486 H -69.4 -40.1 19.0 0.136 0.35 A:Q13426+P04268:0.35
 HOH
 2.404
 OG1
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 LEU A:136 A:1734 114.0 0.671 H -68.3 -42.4 25.0 0.147 0.524 B:Q13426+P12883:0.524
 HOH
 4.026
 CB
 O
LEU B:136 B:1734 95.0 0.559 H -64.5 -40.6 14.0 0.082 0.477 A:Q13426+P12883:0.476
 HOH
 6.913
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ILE A:134 A:134 104.0 0.594 H -64.1 -46.5