Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82491684 . T A CCDS4058.1:NM_003401.3:c.411aaT>aaA_NP_003392.1:p.137N>K Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ASN E:137 F:137 107.0 0.669 H -58.6 -35.3 37.0 0.231 0.438 F:Q13426:0.438
ASN F:137 G:137 86.0 0.537 H -54.0 -54.5 9.0 0.056 0.481 E:Q13426:0.481
ASN M:137 O:137 85.0 0.531 H -53.9 -54.5 8.0 0.05 0.481 N:Q13426:0.481
ASN N:137 P:137 110.0 0.688 H -58.5 -35.5 39.0 0.244 0.444 M:Q13426:0.444
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ASN G:137 F:137 107.0 0.669 H -67.5 -22.2 37.0 0.231 0.438 H:Q13426:0.438
ASN H:137 G:137 71.0 0.444 H -65.5 -36.2 4.0 0.025 0.419 G:Q13426:0.419
ASN Q:137 O:137 70.0 0.438 H -65.5 -35.9 5.0 0.031 0.407 R:Q13426:0.406
ASN R:137 P:137 106.0 0.662 H -67.5 -22.1 36.0 0.225 0.437 Q:Q13426:0.438
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ASN G:137 K:137 66.0 0.412 H -61.1 -46.1 3.0 0.019 0.393 H:Q13426:0.394
ASN H:137 L:137 74.0 0.463 H -68.9 -38.2 23.0 0.144 0.319 G:Q13426:0.319
ASN J:137 N:137 90.0 0.562 H -64.2 -40.8 22.0 0.138 0.424 K:Q13426:0.425
ASN K:137 O:137 94.0 0.588 H -61.9 -49.2 13.0 0.081 0.507 J:Q13426:0.506
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ASN F:137 H:137 74.0 0.463 H -65.5 -38.0 7.0 0.044 0.419 G:Q13426:0.419
ASN G:137 I:137 103.0 0.644 H -70.7 -28.1 29.0 0.181 0.463 F:Q13426:0.463
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ASN A:151 A:137 94.0 0.588 H -66.7 -46.0 21.0 0.131 0.457 A:Q13426:0.456
 HOH
 2.487
 OD1
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ASN A:137 A:137 85.0 0.531 H -65.4 -48.3 15.0 0.094 0.437 B:Q13426:0.438
 HOH
 2.460
 ND2
 O
ASN B:137 B:137 96.0 0.6 H -65.9 -34.7 19.0 0.119 0.481 A:Q13426:0.481
 HOH
 2.885
 ND2
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ASN A:137 A:137 70.0 0.438 H -62.3 -30.5 35.0 0.219 0.219 B:Q13426:0.219
 HOH
 3.224
 CB
 O
ASN B:137 B:537 82.0 0.512 H -65.0 -45.9 10.0 0.062 0.45 A:Q13426:0.45
 HOH
 2.569
 OD1
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ASN A:137 A:137 91.0 0.569 H -79.4 -26.6 24.0 0.15 0.419 B:Q13426:0.419
 HOH
 7.404
 OD1
 O
ASN B:137 B:137 67.0 0.419 H -72.2 -32.7 4.0 0.025 0.394 A:Q13426:0.394
 HOH
 5.832
 OD1
 O
ASN C:137 C:137 99.0 0.619 H -82.1 -24.5 NA NA NA
ASN D:137 D:137 67.0 0.419 H -75.0 -32.9 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ASN C:157 C:137 71.0 0.444 H -62.3 -30.4 NA NA NA
ASN D:157 D:137 85.0 0.531 H -65.1 -45.8 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 ASN A:137 A:137 97.0 0.606 H -59.3 -32.2 4.0 0.025 0.581 B:Q13426:0.581
ASN B:137 B:637 89.0 0.556 T -76.4 -21.0 12.0 0.075 0.481 A:Q13426:0.481
ASN E:137 F:137 75.0 0.469 T -79.0 -21.6 6.0 0.037 0.432 F:Q13426:0.431
ASN F:137 G:637 102.0 0.637 H -72.4 -38.6 11.0 0.069 0.568 E:Q13426:0.569
ASN I:137 J:137 98.0 0.613 H -54.4 -39.2 NA NA NA
ASN J:137 K:637 93.0 0.581 H -84.3 -38.5 NA NA NA
ASN M:137 N:137 89.0 0.556 H -83.7 -25.8 NA NA NA
ASN N:137 P:637 102.0 0.637 H -59.0 -35.3 NA NA NA
ASN Q:137 R:137 89.0 0.556 H -69.2 -27.5 NA NA NA
ASN R:137 V:637 77.0 0.481 H -59.5 -36.0 NA NA NA
ASN W:137 U:137 85.0 0.531 H -60.8 -37.9 NA NA NA
ASN X:137 Y:637 86.0 0.537 H -65.1 -42.0 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 ASN C:166 C:137 88.0 0.55 H -63.5 -45.5 NA NA NA
ASN D:166 D:137 89.0 0.556 H -63.8 -41.4 NA NA NA
ASN G:166 G:137 89.0 0.556 H -63.7 -44.9 19.0 0.119 0.437 H:Q13426:0.438
ASN H:166 H:137 88.0 0.55 H -63.9 -42.0 22.0 0.138 0.412 G:Q13426:0.412
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 ASN A:140 A:137 71.0 0.444 H -61.3 -39.3 4.0 0.025 0.419 B:Q13426+P12883:0.419
 HOH
 6.361
 OD1
 O
ASN B:140 B:137 109.0 0.681 H -60.9 -35.5 26.0 0.163 0.518 A:Q13426+P12883:0.519
 HOH
 5.553
 OD1
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 ASN A:140 A:137 84.0 0.525 H -63.8 -41.2 25.0 0.156 0.369 B:Q13426+P12883:0.369
ASN B:140 B:137 82.0 0.512 H -63.1 -40.3 3.0 0.019 0.493 A:Q13426+P12883:0.494
ASN C:140 C:137 87.0 0.544 H -64.1 -43.9 NA NA NA
ASN D:140 D:137 73.0 0.456 H -62.5 -41.1 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 ASN A:140 A:137 92.0 0.575 H -67.2 -30.9 18.0 0.113 0.462 B:Q13426+P12883:0.463
 HOH
 6.244
 N
 O
ASN B:140 B:137 84.0 0.525 H -68.1 -30.5 10.0 0.062 0.463 A:Q13426+P12883:0.463
 HOH
 5.087
 ND2
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 ASN A:140 A:137 63.0 0.394 H -64.4 -35.3 13.0 0.081 0.313 B:Q13426+P12883:0.312
 HOH
 6.006
 C
 O
ASN B:140 B:137 68.0 0.425 H -64.4 -36.7 15.0 0.094 0.331 A:Q13426+P12883:0.331
 HOH
 6.212
 N
 O
3sr2 1 Q13426 100.0 1e-101 X-RAY
 2011-07-20 ASN A:142 A:137 136.0 0.85 T -100.4 -2.2 72.0 0.45 0.4 B:Q13426:0.4
ASN B:142 B:137 107.0 0.669 T -128.9 -8.3 46.0 0.287 0.382 A:Q13426:0.381
ASN E:142 E:137 102.0 0.637 H -96.3 1.9 31.0 0.194 0.443 F:Q13426:0.444
ASN F:142 F:137 102.0 0.637 H -85.1 -22.1 39.0 0.244 0.393 E:Q13426:0.394
3mud 1 Q13426,P04268 97.81 2e-97 X-RAY
 2010-06-23 ASN A:140 A:249 76.0 0.475 H -65.0 -36.9 11.0 0.069 0.406 B:Q13426+P04268:0.406
 HOH
 2.698
 OD1
 O
ASN B:140 B:249 89.0 0.556 H -63.7 -37.1 26.0 0.163 0.393 A:Q13426+P04268:0.394
 HOH
 2.791
 OD1
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 LEU A:139 A:1737 93.0 0.547 H -74.2 -23.4 3.0 0.018 0.529 B:Q13426+P12883:0.529
 HOH
 8.248
 C
 O
LEU B:139 B:1737 85.0 0.5 H -65.7 -31.2 5.0 0.029 0.471 A:Q13426+P12883:0.471
 HOH
 4.194
 CD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ASN A:137 A:137 88.0 0.55 H -65.2 -36.7