Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82491697 . G A CCDS4058.1:NM_003401.3:c.424Gag>Aag_NP_003392.1:p.142E>K Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 GLU E:142 F:142 72.0 0.379 H -55.2 -54.1 72.0 0.379 0.0
GLU F:142 G:142 89.0 0.468 H -53.0 -47.4 89.0 0.468 0.0
GLU M:142 O:142 88.0 0.463 H -53.0 -47.3 88.0 0.463 0.0
GLU N:142 P:142 72.0 0.379 H -55.4 -54.1 72.0 0.379 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 GLU G:142 F:142 88.0 0.463 H -50.7 -44.5 88.0 0.463 0.0
GLU H:142 G:142 98.0 0.516 H -64.2 -52.9 98.0 0.516 0.0
GLU Q:142 O:142 94.0 0.495 H -64.2 -53.2 94.0 0.495 0.0
GLU R:142 P:142 84.0 0.442 H -50.7 -44.6 84.0 0.442 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 GLU G:142 K:142 130.0 0.684 H -64.2 -44.4 127.0 0.668 0.016 H:Q13426:0.016
GLU H:142 L:142 98.0 0.516 H -62.1 -45.2 98.0 0.516 0.0
GLU J:142 N:142 106.0 0.558 H -68.4 -37.0 106.0 0.558 0.0
GLU K:142 O:142 98.0 0.516 H -67.0 -42.9 84.0 0.442 0.074 J:Q13426:0.074
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 GLU F:142 H:142 96.0 0.505 H -61.3 -52.5 96.0 0.505 0.0
GLU G:142 I:142 102.0 0.537 H -63.6 -52.1 102.0 0.537 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 GLU A:156 A:142 133.0 0.7 H -65.1 -30.3 133.0 0.7 0.0 HOH
 2.469
 OE1
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 GLU A:142 A:142 119.0 0.626 H -75.2 -39.4 119.0 0.626 0.0 HOH
 3.635
 CB
 O
GLU B:142 B:142 121.0 0.637 H -84.4 -48.9 121.0 0.637 0.0 HOH
 4.915
 CB
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 GLU A:142 A:142 103.0 0.542 H -62.4 -41.7 103.0 0.542 0.0 HOH
 3.590
 N
 O
GLU B:142 B:542 88.0 0.463 H -47.3 -37.3 88.0 0.463 0.0 HOH
 6.853
 N
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 GLU A:142 A:142 113.0 0.595 H -58.0 -44.0 113.0 0.595 0.0 HOH
 6.690
 N
 O
GLU B:142 B:142 123.0 0.647 H -65.9 -44.6 123.0 0.647 0.0 HOH
 4.374
 N
 O
GLU C:142 C:142 113.0 0.595 H -68.2 -38.2 NA NA NA
GLU D:142 D:142 123.0 0.647 H -72.8 -48.1 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 GLU C:162 C:142 103.0 0.542 H -62.4 -41.8 NA NA NA
GLU D:162 D:142 85.0 0.447 H -47.3 -37.2 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 GLU A:142 A:142 110.0 0.579 T -104.4 -21.8 110.0 0.579 0.0
GLU B:142 B:642 103.0 0.542 H -71.8 -28.8 103.0 0.542 0.0
GLU E:142 F:142 134.0 0.705 H -77.8 -17.8 134.0 0.705 0.0
GLU F:142 G:642 131.0 0.689 H -56.1 -48.9 131.0 0.689 0.0
GLU I:142 J:142 90.0 0.474 H -76.5 -45.3 NA NA NA
GLU J:142 K:642 88.0 0.463 H -65.2 -45.3 NA NA NA
GLU M:142 N:142 131.0 0.689 H -73.1 -36.2 NA NA NA
GLU N:142 P:642 116.0 0.611 H -57.2 -30.7 NA NA NA
GLU Q:142 R:142 125.0 0.658 H -84.5 -28.1 NA NA NA
GLU R:142 V:642 137.0 0.721 H -63.9 -32.3 NA NA NA
GLU W:142 U:142 120.0 0.632 H -90.5 -31.4 NA NA NA
GLU X:142 Y:642 129.0 0.679 H -92.3 -32.9 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 GLU C:171 C:142 107.0 0.563 H -76.8 -43.3 NA NA NA
GLU D:171 D:142 105.0 0.553 H -78.4 -45.1 NA NA NA
GLU G:171 G:142 114.0 0.6 H -75.9 -44.4 114.0 0.6 0.0
GLU H:171 H:142 109.0 0.574 H -78.4 -45.0 109.0 0.574 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 GLU A:145 A:142 130.0 0.684 H -65.9 -36.3 128.0 0.674 0.01 B:Q13426+P12883:0.011
 HOH
 2.668
 O
 O
GLU B:145 B:142 104.0 0.547 H -56.5 -45.8 104.0 0.547 0.0 HOH
 6.956
 CG
 O
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 GLU A:145 A:142 123.0 0.647 H -62.0 -45.3 123.0 0.647 0.0
GLU B:145 B:142 118.0 0.621 H -62.1 -46.0 118.0 0.621 0.0
GLU C:145 C:142 116.0 0.611 H -61.9 -45.1 NA NA NA
GLU D:145 D:142 130.0 0.684 H -64.0 -42.9 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 GLU A:145 A:142 141.0 0.742 H -61.1 -47.8 141.0 0.742 0.0 HOH
 6.723
 OE1
 O
GLU B:145 B:142 115.0 0.605 H -59.9 -47.9 115.0 0.605 0.0 HOH
 9.061
 OE2
 O
5chx 1 Q13426,P12883 99.3 2e-103 X-RAY
 2015-12-02 GLU A:145 A:142 100.0 0.526 H -64.7 -43.8 100.0 0.526 0.0 HOH
 5.153
 OE2
 O
GLU B:145 B:142 100.0 0.526 H -64.1 -43.2 100.0 0.526 0.0 HOH
 3.551
 O
 O
5wj7 1 Q13426,P12883 91.78 3e-96 X-RAY
 2017-08-09 GLU A:144 A:1742 117.0 0.616 H -65.1 -37.4 117.0 0.616 0.0 HOH
 9.346
 O
 O
GLU B:144 B:1742 122.0 0.642 H -64.6 -32.0 122.0 0.642 0.0 HOH
 9.008
 OE2
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 ASN A:137 C:1679 101.0 0.631 H -78.9 -36.4 81.0 0.506 0.125 B:Q13426+P12883:0.125
ASN B:137 D:1679 105.0 0.656 H -63.7 -26.4 61.0 0.381 0.275 A:Q13426+P12883:0.125
C:Q13426+P12883:0.144
ASN C:137 A:1679 96.0 0.6 H -65.7 -32.3 85.0 0.531 0.069 D:Q13426+P12883:0.069
ASN D:137 B:1679 107.0 0.669 H -65.6 -35.3 79.0 0.494 0.175 A:Q13426+P12883:0.087
C:Q13426+P12883:0.087

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 GLU A:142 A:142 98.0 0.516 H -60.2 -39.0