Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82491718 . G A CCDS4058.1:NM_003401.3:c.445Gaa>Aaa_NP_003392.1:p.149E>K Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 GLU E:149 F:149 64.0 0.337 H -55.2 -51.8 64.0 0.337 0.0
GLU F:149 G:149 79.0 0.416 H -64.4 -36.9 79.0 0.416 0.0
GLU M:149 O:149 79.0 0.416 H -64.3 -37.1 79.0 0.416 0.0
GLU N:149 P:149 63.0 0.332 H -55.2 -52.0 63.0 0.332 0.0
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 GLU G:149 F:149 95.0 0.5 H -62.4 -51.9 95.0 0.5 0.0
GLU H:149 G:149 69.0 0.363 H -57.0 -51.3 69.0 0.363 0.0
GLU Q:149 O:149 70.0 0.368 H -57.2 -51.3 70.0 0.368 0.0
GLU R:149 P:149 94.0 0.495 H -62.4 -52.0 94.0 0.495 0.0
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 GLU G:149 K:149 107.0 0.563 H -62.8 -43.0 107.0 0.563 0.0
GLU H:149 L:149 89.0 0.468 H -73.3 -39.6 89.0 0.468 0.0
GLU J:149 N:149 117.0 0.616 H -66.9 -35.0 117.0 0.616 0.0
GLU K:149 O:149 85.0 0.447 H -65.0 -44.7 85.0 0.447 0.0
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 GLU F:149 H:149 55.0 NA H -64.4 -42.5 55.0 NA NA
GLU G:149 I:149 99.0 0.521 H -63.9 -41.0 99.0 0.521 0.0
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 GLU A:163 A:149 85.0 0.447 H -60.8 -30.9 85.0 0.447 0.0 HOH
 3.214
 OE2
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 GLU A:149 A:149 85.0 0.447 H -60.0 -33.2 85.0 0.447 0.0 HOH
 3.650
 OE2
 O
GLU B:149 B:149 83.0 0.437 H -77.9 -44.6 83.0 0.437 0.0 HOH
 5.452
 N
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 GLU A:149 A:149 103.0 0.542 H -62.6 -41.7 103.0 0.542 0.0 HOH
 8.091
 OE2
 O
GLU B:149 B:549 75.0 0.395 H -55.7 -33.6 75.0 0.395 0.0 HOH
 9.086
 OE2
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 GLU A:149 A:149 82.0 0.432 H -53.3 -47.7 82.0 0.432 0.0 HOH
 2.633
 O
 O
GLU B:149 B:149 75.0 0.395 H -54.6 -36.4 75.0 0.395 0.0 HOH
 3.700
 N
 O
GLU C:149 C:149 80.0 0.421 H -59.2 -42.0 NA NA NA
GLU D:149 D:149 79.0 0.416 H -64.5 -45.8 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 GLU C:169 C:149 102.0 0.537 H -62.6 -41.7 NA NA NA
GLU D:169 D:149 74.0 0.389 H -55.7 -33.6 NA NA NA
3rwr 1 Q13426 100.0 3e-116 X-RAY
 2011-12-07 GLU A:149 NA:NA DO NA DO DO DO NA NA NA
GLU B:149 B:649 113.0 0.595 T -84.0 2.9 100.0 0.526 0.069 A:Q13426:0.068
GLU E:149 F:149 123.0 0.647 H -100.5 -36.2 123.0 0.647 0.0
GLU F:149 G:649 86.0 0.453 T -110.1 -24.7 86.0 0.453 0.0
GLU I:149 J:149 100.0 0.526 H -54.3 -70.7 NA NA NA
GLU J:149 K:649 127.0 0.668 H -58.9 -22.3 NA NA NA
GLU M:149 N:149 101.0 0.532 H -105.2 -45.7 NA NA NA
GLU N:149 P:649 81.0 0.426 H -51.7 -44.7 NA NA NA
GLU Q:149 R:149 101.0 0.532 H -52.0 -31.5 NA NA NA
GLU R:149 V:649 103.0 0.542 H -62.2 -56.0 NA NA NA
GLU W:149 U:149 88.0 0.463 H -58.0 -50.3 NA NA NA
GLU X:149 Y:649 126.0 0.663 H -81.1 -47.1 NA NA NA
3q4f 2 Q13426 100.0 3e-116 X-RAY
 2011-08-03 GLU C:178 C:149 90.0 0.474 H -65.5 -38.8 NA NA NA
GLU D:178 D:149 89.0 0.468 H -70.4 -40.7 NA NA NA
GLU G:178 G:149 77.0 0.405 H -65.6 -38.7 77.0 0.405 0.0
GLU H:178 H:149 79.0 0.416 H -69.9 -41.2 79.0 0.416 0.0
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 GLU A:152 A:1552 94.0 0.495 H -61.6 -45.0 94.0 0.495 0.0 HOH
 5.450
 OE2
 O
GLU B:152 B:1552 136.0 0.716 H -53.1 -45.5 136.0 0.716 0.0 HOH
 2.665
 O
 O
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 LYS A:159 A:1644 144.0 0.72 H -57.5 -49.3 144.0 0.72 0.0 HOH
 3.795
 O
 O
LYS B:159 B:1644 141.0 0.705 H -59.6 -49.1 141.0 0.705 0.0 HOH
 4.899
 O
 O
5wlz 1 Q13426,P12883 85.33 1e-86 X-RAY
 2017-08-23 GLU A:144 C:1686 116.0 0.611 H -59.0 -38.8 116.0 0.611 0.0
GLU B:144 D:1686 119.0 0.626 H -62.4 -39.1 88.0 0.463 0.163 C:Q13426+P12883:0.163
GLU C:144 A:1686 121.0 0.637 H -67.9 -36.0 121.0 0.637 0.0
GLU D:144 B:1686 121.0 0.637 H -62.2 -38.3 91.0 0.479 0.158 A:Q13426+P12883:0.158

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 GLU A:149 A:149 84.0 0.442 H -62.9 -37.6