Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 82491754 . C A CCDS4058.1:NM_003401.3:c.481Cga>Aga_NP_003392.1:p.161R>R Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7lsy 5 Q13426 99.11 0.0 EM
 2021-04-14 ARG E:161 F:161 157.0 0.698 H -64.3 -41.1 61.0 0.271 0.427 P:P49917:0.427
ARG F:161 G:161 104.0 0.462 H -67.4 -32.5 72.0 0.32 0.142 E:Q13426:0.142
ARG M:161 O:161 103.0 0.458 H -67.5 -32.3 69.0 0.307 0.151 N:Q13426:0.151
ARG N:161 P:161 157.0 0.698 H -64.2 -41.1 63.0 0.28 0.418 Q:P49917:0.418
7lt3 7 Q13426 99.11 0.0 EM
 2021-04-14 ARG G:161 F:161 156.0 0.693 H -58.0 -45.0 25.0 0.111 0.582 S:P49917:0.551
H:Q13426:0.076
ARG H:161 G:161 152.0 0.676 H -64.8 -41.3 120.0 0.533 0.143 G:Q13426:0.142
ARG Q:161 O:161 153.0 0.68 H -64.8 -41.4 121.0 0.538 0.142 R:Q13426:0.142
ARG R:161 P:161 158.0 0.702 H -57.9 -45.0 25.0 0.111 0.591 T:P49917:0.564
Q:Q13426:0.071
7nfc 4 Q13426 99.11 0.0 EM
 2021-08-18 ARG G:161 K:161 155.0 0.689 H -64.7 -36.7 4.0 0.018 0.671 H:Q13426:0.107
I:P49917:0.582
ARG H:161 L:161 129.0 0.573 H -69.3 -38.0 74.0 0.329 0.244 G:Q13426:0.244
ARG J:161 N:161 115.0 0.511 H -65.2 -39.0 38.0 0.169 0.342 K:Q13426:0.031
L:P49917:0.311
ARG K:161 O:161 155.0 0.689 H -65.7 -36.2 79.0 0.351 0.338 J:Q13426:0.338
7nfe 5 Q13426 99.11 0.0 EM
 2021-08-18 ARG F:161 H:161 163.0 0.724 H -61.4 -44.4 47.0 0.209 0.515 H:P49917:0.484
G:Q13426:0.084
ARG G:161 I:161 131.0 0.582 H -61.3 -44.1 89.0 0.396 0.186 F:Q13426:0.187
6abo 1 Q13426 100.0 8e-160 X-RAY
 2019-07-31 ARG A:175 A:161 152.0 0.676 H -78.2 -36.4 58.0 0.258 0.418 B:Q0D2I5:0.418
 HOH
 2.741
 NH2
 O
1ik9 1 Q13426 98.12 9e-156 X-RAY
 2001-11-21 ARG A:161 A:161 168.0 0.747 H -48.6 -35.5 131.0 0.582 0.165 B:Q13426:0.164
ARG B:161 B:161 144.0 0.64 H -53.9 -45.7 107.0 0.476 0.164 A:Q13426:0.164
 HOH
 9.837
 NH1
 O
1fu1 1 Q13426 99.51 3e-151 X-RAY
 2000-12-11 ARG A:161 A:161 167.0 0.742 H -63.7 -35.4 167.0 0.742 0.0 HOH
 3.216
 NH2
 O
ARG B:161 B:561 158.0 0.702 H -64.7 -38.1 158.0 0.702 0.0 HOH
 5.193
 NH1
 O
3ii6 1 Q13426 99.01 2e-150 X-RAY
 2009-08-11 ARG A:161 A:161 152.0 0.676 H -56.5 -43.1 16.0 0.071 0.605 E:P49917:0.582
B:Q13426:0.071
 HOH
 2.409
 NH2
 O
ARG B:161 B:161 165.0 0.733 H -74.7 -33.4 132.0 0.587 0.146 A:Q13426:0.147
 HOH
 3.687
 CG
 O
ARG C:161 C:161 152.0 0.676 H -65.3 -39.0 NA NA NA
ARG D:161 D:161 176.0 0.782 H -54.2 -51.4 NA NA NA
3w03 2 Q13426 100.0 8e-122 X-RAY
 2012-11-07 ARG C:181 C:161 173.0 0.769 H -63.6 -35.4 NA NA NA
ARG D:181 D:161 164.0 0.729 H -64.6 -38.1 NA NA NA
4xa4 1 Q13426,P12883 85.8 1e-106 X-RAY
 2015-07-01 GLU A:171 A:1571 120.0 0.632 H -70.6 -45.6 120.0 0.632 0.0
GLU B:171 B:1571 87.0 0.458 H -68.2 -49.8 87.0 0.458 0.0
5cj4 1 Q13426,P12883 86.98 8e-105 X-RAY
 2015-12-02 GLU A:157 A:1571 101.0 0.532 H -78.5 -12.5 101.0 0.532 0.0
GLU B:157 B:1571 55.0 0.289 H -72.8 -10.6 55.0 0.289 0.0
GLU C:157 C:1571 89.0 0.468 H -75.1 -14.5 NA NA NA
GLU D:157 D:1571 73.0 0.384 H -74.3 -11.9 NA NA NA
5cj0 1 Q13426,P12883 81.87 1e-103 X-RAY
 2015-12-02 GLN A:171 A:1656 113.0 0.628 H -57.0 -41.8 86.0 0.478 0.15 B:Q13426+P12883:0.15
 HOH
 2.611
 O
 O
GLN B:171 B:1656 134.0 0.744 H -57.3 -43.0 110.0 0.611 0.133 A:Q13426+P12883:0.133
 HOH
 8.659
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13426-f1 1 Q13426 99.11 0.0 ARG A:161 A:161 156.0 0.693 H -69.4 -38.3