Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 88119593 . T A CCDS47244.1:NM_001131005.2:c.13Aag>Tag_NP_001124477.1:p.5K>* Homo sapiens myocyte enhancer factor 2C (MEF2C), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5f28 1 Q8CFN5 97.8 5e-59 X-RAY
 2016-07-13 LYS A:5 NA:NA DO NA DO DO DO NA NA NA
LYS B:5 NA:NA DO NA DO DO DO NA NA NA
LYS C:5 NA:NA DO NA DO DO DO NA NA NA
LYS D:5 NA:NA DO NA DO DO DO NA NA NA
3kov 1 Q02078 96.67 1e-57 X-RAY
 2010-02-16 LYS A:4 A:5 181.0 0.905 -76.4 151.8 181.0 0.905 0.0 DT
DT
DT
DA
DT
DA
DA
DA
DT
DA
DA
DA
DT
DA
DG
DT
 5.514
4.321
3.809
8.893
7.500
5.848
6.035
8.424
6.173
3.021
2.774
7.904
9.083
5.049
4.477
9.713
 N
N
CD
N
N
O
O
N
N
CB
CD
NZ
CA
O
O
N
 O3'
OP1
OP1
C2
O2
C4'
OP1
N3
O3'
O3'
OP2
OP2
O3'
O3'
OP1
OP1
LYS B:4 B:5 182.0 0.91 -77.4 150.4 182.0 0.91 0.0 DT
DT
DT
DA
DT
DA
DA
DA
DT
DA
DA
DA
DT
DA
DG
 8.432
5.467
4.047
8.814
7.736
5.060
5.011
8.371
5.069
3.042
3.278
8.345
9.431
5.621
4.670
 N
CB
CG
N
N
C
O
N
N
CG
CE
NZ
CA
N
O
 O3'
O3'
OP1
C2
O2
C4'
OP1
N3
O3'
O3'
OP1
OP2
O3'
O3'
OP1
LYS C:4 I:5 180.0 0.9 -78.1 151.0 NA NA NA
LYS D:4 J:5 184.0 0.92 -78.5 151.0 NA NA NA
3p57 1 Q02078 96.67 1e-57 X-RAY
 2011-08-10 LYS A:4 A:5 167.0 0.835 -70.6 141.5 167.0 0.835 0.0 DT
DA
DA
DA
DT
DA
DA
DA
HOH
 8.743
5.284
4.930
9.299
5.576
3.732
3.523
9.020
2.790
 C
O
O
N
N
N
CG
NZ
N
 O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
O
LYS B:4 B:5 180.0 0.9 -72.8 144.4 180.0 0.9 0.0 DA
DT
DT
DT
DA
DT
DA
DG
HOH
 9.547
5.630
3.754
3.336
9.348
8.839
5.219
4.954
2.791
 N
N
N
CG
CE
C
O
O
O
 N3
O3'
C5'
OP1
OP2
O3'
O3'
OP1
O
LYS C:4 C:5 177.0 0.885 -79.2 135.7 177.0 0.885 0.0 DA
DT
DT
DT
DA
DT
DA
DG
HOH
 9.310
5.676
3.759
3.353
8.852
8.561
5.423
5.361
3.132
 N
N
CG
CG
NZ
CA
C
O
N
 N3
O3'
O3'
OP1
OP2
O3'
O3'
OP1
O
LYS D:4 D:5 159.0 0.795 -75.2 136.5 159.0 0.795 0.0 DT
DA
DA
DA
DT
DA
DA
DA
HOH
 8.587
5.208
4.787
9.731
5.674
3.822
3.721
9.115
3.732
 C
O
O
N
N
N
CD
NZ
CA
 O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
O
LYS E:4 I:5 176.0 0.88 -62.0 135.6 176.0 0.88 0.0 DA
DT
DT
DT
DA
DT
DA
DG
HOH
 8.877
5.607
3.868
3.618
9.166
8.236
5.411
5.290
3.896
 N
N
N
CD
NZ
C
C
O
CB
 N3
O3'
C5'
OP1
OP2
O3'
C4'
OP1
O
LYS F:4 J:5 175.0 0.875 -75.5 139.2 175.0 0.875 0.0 DT
DA
DA
DA
DT
DA
DA
DA
HOH
 8.837
5.291
4.972
9.279
5.678
3.611
3.242
8.759
3.326
 C
O
O
N
N
CB
CG
NZ
O
 O3'
O3'
OP1
N3
O3'
O3'
OP1
OP2
O
6byy 1 Q02078,Q02080 89.47 3e-57 X-RAY
 2018-01-31 LYS A:5 A:5 181.0 0.905 -71.6 141.6 181.0 0.905 0.0 DA
DT
DT
DT
DA
DT
DA
DG
HOH
 9.386
5.747
3.995
3.523
9.543
8.717
5.110
4.968
3.537
 N
N
N
CG
NZ
C
O
O
CA
 N3
O3'
C5'
OP1
OP2
O3'
O3'
OP1
O
LYS B:5 B:5 206.0 1.0 -68.3 141.4 206.0 1.0 0.0 DA
DT
DA
DA
DA
DT
DA
DA
DA
HOH
 9.934
8.935
5.476
4.864
9.429
5.394
3.637
3.054
8.091
3.435
 N
C
O
O
N
N
N
NZ
NZ
O
 C2
O3'
O3'
OP1
N3
O3'
C5'
OP2
OP2
O
LYS C:5 C:5 184.0 0.92 -83.7 135.0 NA NA NA
LYS D:5 D:5 173.0 0.865 -79.8 129.2 NA NA NA
6wc2 1 Q02078,Q02080 89.47 3e-57 X-RAY
 2020-07-22 LYS A:5 A:5 181.0 0.905 -68.0 135.9 181.0 0.905 0.0 DT
DA
DG
DA
DT
DT
DT
DT
HOH
 8.683
5.319
5.257
9.451
5.560
3.827
3.497
9.293
4.087
 C
O
O
N
N
N
CG
NZ
NZ
 O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
O
LYS B:5 B:5 227.0 1.0 360.0 -19.1 227.0 1.0 0.0 DA
DA
DA
DA
DA
DA
DG
HOH
 5.987
3.789
2.708
8.802
9.449
5.995
5.849
5.699
 N
CA
O
NZ
N
N
N
NZ
 O3'
O3'
OP1
OP2
O3'
O3'
OP1
O
LYS C:5 C:5 189.0 0.945 -64.9 136.0 NA NA NA
LYS D:5 D:5 181.0 0.905 -66.3 134.1 NA NA NA
LYS I:5 I:5 176.0 0.88 -65.8 136.5 NA NA NA
LYS J:5 J:5 178.0 0.89 -68.6 137.0 NA NA NA
1tqe 3 Q02080 86.02 8e-56 X-RAY
 2004-12-21 LYS E:5 P:5 163.0 0.815 -73.3 136.2 163.0 0.815 0.0 DA
DT
DA
DA
DA
DT
DA
DA
DA
 9.989
9.237
5.671
4.684
9.826
5.484
3.569
3.416
9.763
 N
C
N
O
N
N
N
CG
CE
 C2
O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
LYS F:5 Q:5 165.0 0.825 -74.4 135.9 165.0 0.825 0.0 DA
DT
DT
DT
DT
DA
DG
 9.413
5.566
3.941
3.696
9.196
5.386
5.650
 N
N
N
CG
N
O
O
 N3
O3'
C5'
OP1
O2
O3'
OP1
LYS H:5 R:5 165.0 0.825 -73.5 135.8 NA NA NA
LYS I:5 S:5 161.0 0.805 -74.0 135.5 NA NA NA
6c9l 1 Q02080 86.02 8e-56 X-RAY
 2018-02-07 LYS A:5 NA:NA DO NA DO DO DO NA NA NA
LYS B:5 NA:NA DO NA DO DO DO NA NA NA
LYS C:5 C:5 261.0 1.0 360.0 -41.8 NA NA NA
LYS D:5 NA:NA DO NA DO DO DO NA NA NA
LYS E:5 NA:NA DO NA DO DO DO NA NA NA
LYS F:5 NA:NA DO NA DO DO DO NA NA NA
6bz1 1 Q02078,Q02080 88.42 9e-56 X-RAY
 2018-02-07 LYS A:5 C:5 195.0 0.975 -66.1 141.2 195.0 0.975 0.0 DA
DT
DA
DA
DA
DT
DA
DA
DA
 9.846
8.122
5.072
4.490
9.179
5.165
3.381
3.146
8.289
 N
C
O
O
N
N
N
CG
NZ
 C2
O3'
O3'
OP1
C2
O3'
C5'
OP1
OP2
LYS B:5 D:5 196.0 0.98 -65.9 140.6 196.0 0.98 0.0 DA
DT
DT
DT
DA
DA
DT
DA
DG
 9.026
5.431
3.919
3.473
8.414
9.955
8.501
5.484
4.759
 N
N
N
CD
NZ
N
C
C
O
 C2
O3'
C5'
OP1
OP2
C2
O3'
C4'
OP1
LYS E:5 A:5 189.0 0.945 -66.6 140.6 NA NA NA
LYS F:5 B:5 172.0 0.86 -68.7 140.3 NA NA NA
1n6j 3 Q02080 85.87 6e-55 X-RAY
 2003-11-11 LYS C:4 A:5 169.0 0.845 -77.8 130.2 169.0 0.845 0.0 DA
DT
DT
DT
DA
DT
DA
DG
HOH
 9.212
5.795
3.952
3.118
9.737
8.755
5.238
5.348
3.282
 N
N
CG
CG
CE
CA
N
O
N
 N3
O3'
O3'
OP1
OP2
O3'
C4'
OP1
O
LYS D:4 B:5 168.0 0.84 -78.1 131.3 168.0 0.84 0.0 DT
DA
DA
DA
DT
DA
DA
DA
HOH
 8.311
5.188
4.807
9.632
5.566
3.787
3.162
9.645
3.689
 CA
N
O
N
N
N
CG
CE
CA
 O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
O
6wc5 1 Q02080 86.67 8e-54 X-RAY
 2020-07-22 LYS A:4 A:5 202.0 1.0 -74.0 127.4 202.0 1.0 0.0 DT
DA
DG
DA
DT
DT
DT
DT
 8.580
5.593
5.588
9.355
5.474
3.845
3.577
8.973
 CA
N
O
N
N
CG
NZ
NZ
 O3'
C4'
OP1
N3
O3'
O3'
OP1
OP2
LYS B:4 B:5 181.0 0.905 -75.7 129.3 181.0 0.905 0.0 DA
DA
DA
DA
DA
DA
DG
 5.964
4.149
3.509
9.280
9.828
6.623
6.178
 N
N
CG
CE
C
C
O
 O3'
C5'
OP1
OP2
O3'
O3'
OP1
LYS C:4 C:5 180.0 0.9 -75.2 126.3 NA NA NA
LYS D:4 D:5 184.0 0.92 -73.0 127.5 NA NA NA
1egw 3 Q02078 98.7 9e-50 X-RAY
 2000-03-20 LYS E:4 A:5 183.0 0.915 -75.2 141.5 183.0 0.915 0.0 DA
DT
DT
DA
DT
DT
DA
DG
DA
DA
DT
DA
DA
DT
DA
DG
HOH
 9.490
5.971
4.034
3.717
9.364
8.428
5.197
4.843
9.471
5.398
3.804
3.546
9.168
8.803
5.410
5.422
2.730
 N
N
CB
CG
CE
C
C
O
N
N
N
CG
CE
CA
C
O
NZ
 N3
O3'
O3'
OP1
OP2
O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
O3'
C4'
OP1
O
LYS F:4 B:5 183.0 0.915 -72.7 145.7 183.0 0.915 0.0 DA
DT
DT
DA
DT
DT
DA
DG
DA
DA
DT
DA
DA
DT
DA
DG
HOH
 9.597
5.336
3.745
3.483
9.219
8.461
5.308
5.325
9.614
5.878
4.019
3.658
9.383
8.765
5.098
4.684
2.713
 N
N
N
CG
CE
C
C
O
N
N
CB
CG
CE
C
O
O
O
 N3
O3'
C5'
OP1
OP2
O3'
C4'
OP1
N3
O3'
O3'
OP1
OP2
O3'
O3'
OP1
O
LYS G:4 C:5 189.0 0.945 -73.7 146.3 NA NA NA
LYS H:4 D:5 182.0 0.91 -76.1 141.6 NA NA NA
3mu6 1 Q02078 97.18 2e-43 X-RAY
 2011-11-02 LYS A:4 A:5 197.0 0.985 -63.8 140.0 197.0 0.985 0.0 DT
DA
DG
DA
DA
DT
DA
DA
 8.593
5.295
5.064
9.286
5.553
3.799
3.720
8.839
 CA
O
O
N
N
N
CE
CE
 O3'
O3'
OP1
N3
O3'
C5'
OP1
OP2
LYS B:4 B:5 200.0 1.0 -63.5 139.9 200.0 1.0 0.0 DA
DT
DT
DA
DT
DT
DA
DG
 9.408
5.631
3.819
3.635
8.872
8.739
5.405
5.145
 N
N
N
CE
CE
C
O
O
 N3
O3'
C5'
OP1
OP2
O3'
O3'
OP1
LYS E:4 C:5 200.0 1.0 -62.8 139.8 NA NA NA
LYS F:4 D:5 201.0 1.0 -62.9 139.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06413-f1 1 Q06413 100.0 0.0 LYS A:5 A:5 213.0 1.0 -64.5 141.8