Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 114552628 . T A CCDS4116.1:NM_005023.3:c.886Aat>Tat_NP_005014.2:p.296N>Y Homo sapiens protein geranylgeranyltransferase type I subunit beta (PGGT1B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n4p 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ASN B:296 B:296 92.0 0.575 H -59.6 -41.2 92.0 0.575 0.0 HOH
 2.891
 OD1
 O
ASN D:296 D:296 88.0 0.55 H -57.2 -44.1 NA NA NA
ASN F:296 F:296 86.0 0.537 H -60.5 -41.2 NA NA NA
ASN H:296 H:296 93.0 0.581 H -58.5 -45.4 NA NA NA
ASN J:296 J:296 89.0 0.556 H -57.3 -46.4 NA NA NA
ASN L:296 L:296 70.0 0.438 H -58.1 -43.4 NA NA NA
1n4q 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ASN B:296 B:296 90.0 0.562 H -61.6 -40.7 90.0 0.562 0.0 HOH
 8.603
 C
 O
ASN D:296 D:296 90.0 0.562 H -57.1 -42.4 NA NA NA
ASN F:296 F:296 89.0 0.556 H -61.0 -40.3 NA NA NA
ASN H:296 H:296 95.0 0.594 H -58.5 -44.5 NA NA NA
ASN J:296 J:296 89.0 0.556 H -59.6 -42.9 NA NA NA
ASN L:296 L:296 82.0 0.512 H -58.9 -42.2 NA NA NA
1n4r 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ASN B:296 B:296 92.0 0.575 H -61.8 -43.5 92.0 0.575 0.0 HOH
 8.533
 C
 O
ASN D:296 D:296 81.0 0.506 H -57.6 -45.4 NA NA NA
ASN F:296 F:296 90.0 0.562 H -61.5 -42.4 NA NA NA
ASN H:296 H:296 93.0 0.581 H -59.1 -46.5 NA NA NA
ASN J:296 J:296 98.0 0.613 H -58.2 -47.4 NA NA NA
ASN L:296 L:296 85.0 0.531 H -59.2 -44.6 NA NA NA
1n4s 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ASN B:296 B:296 92.0 0.575 H -62.4 -38.5 92.0 0.575 0.0 HOH
 3.105
 OD1
 O
ASN D:296 D:296 90.0 0.562 H -59.1 -41.7 NA NA NA
ASN F:296 F:296 88.0 0.55 H -62.5 -39.0 NA NA NA
ASN H:296 H:296 93.0 0.581 H -59.6 -43.2 NA NA NA
ASN J:296 J:296 82.0 0.512 H -60.4 -41.6 NA NA NA
ASN L:296 L:296 75.0 0.469 H -60.1 -39.8 NA NA NA
1s64 2 P53610 97.61 0.0 X-RAY
 2004-07-27 ASN B:296 B:296 89.0 0.556 H -60.5 -41.4 89.0 0.556 0.0 HOH
 3.114
 ND2
 O
ASN D:296 D:296 89.0 0.556 H -58.2 -43.1 NA NA NA
ASN F:296 F:296 86.0 0.537 H -61.2 -41.7 NA NA NA
ASN H:296 H:296 95.0 0.594 H -58.6 -44.2 NA NA NA
ASN J:296 J:296 78.0 0.487 H -58.7 -43.7 NA NA NA
ASN L:296 L:296 80.0 0.5 H -59.7 -42.2 NA NA NA
1tnb 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ASN B:296 B:296 96.0 0.6 H -59.6 -45.4 96.0 0.6 0.0 HOH
 8.504
 N
 O
ASN D:296 D:296 89.0 0.556 H -59.3 -43.5 NA NA NA
ASN F:296 F:296 88.0 0.55 H -60.9 -42.0 NA NA NA
ASN H:296 H:296 93.0 0.581 H -58.0 -46.5 NA NA NA
ASN J:296 J:296 82.0 0.512 H -59.0 -45.6 NA NA NA
ASN L:296 L:296 77.0 0.481 H -59.5 -43.9 NA NA NA
1tno 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ASN B:296 B:296 88.0 0.55 H -61.0 -41.5 88.0 0.55 0.0 HOH
 2.969
 OD1
 O
ASN D:296 D:296 91.0 0.569 H -59.5 -42.5 NA NA NA
ASN F:296 F:296 89.0 0.556 H -61.6 -39.2 NA NA NA
ASN H:296 H:296 95.0 0.594 H -59.6 -43.2 NA NA NA
ASN J:296 J:296 75.0 0.469 H -60.5 -42.0 NA NA NA
ASN L:296 L:296 80.0 0.5 H -59.8 -42.5 NA NA NA
1tnu 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ASN B:296 B:296 92.0 0.575 H -59.4 -43.0 92.0 0.575 0.0 HOH
 2.837
 OD1
 O
ASN D:296 D:296 87.0 0.544 H -57.9 -44.5 NA NA NA
ASN F:296 F:296 88.0 0.55 H -61.4 -40.5 NA NA NA
ASN H:296 H:296 90.0 0.562 H -58.2 -45.9 NA NA NA
ASN J:296 J:296 82.0 0.512 H -57.9 -46.0 NA NA NA
ASN L:296 L:296 71.0 0.444 H -59.1 -44.2 NA NA NA
1tny 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ASN B:296 B:296 95.0 0.594 H -59.6 -45.3 95.0 0.594 0.0 HOH
 2.751
 OD1
 O
ASN D:296 D:296 89.0 0.556 H -58.4 -45.2 NA NA NA
ASN F:296 F:296 86.0 0.537 H -59.5 -43.0 NA NA NA
ASN H:296 H:296 88.0 0.55 H -58.6 -46.0 NA NA NA
ASN J:296 J:296 72.0 0.45 H -59.6 -45.3 NA NA NA
ASN L:296 L:296 75.0 0.469 H -59.3 -44.3 NA NA NA
1tnz 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ASN B:296 B:296 94.0 0.588 H -58.9 -42.6 94.0 0.588 0.0 HOH
 8.932
 N
 O
ASN D:296 D:296 88.0 0.55 H -55.6 -44.7 NA NA NA
ASN F:296 F:296 87.0 0.544 H -58.4 -43.1 NA NA NA
ASN H:296 H:296 94.0 0.588 H -57.8 -44.8 NA NA NA
ASN J:296 J:296 83.0 0.519 H -57.6 -43.5 NA NA NA
ASN L:296 L:296 74.0 0.463 H -58.0 -43.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53609-f1 1 P53609 100.0 0.0 ASN A:296 A:296 73.0 0.456 H -61.9 -41.0