Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 114557591 | . | T | A | CCDS4116.1:NM_005023.3:c.773aAt>aTt_NP_005014.2:p.258N>I | Homo sapiens protein geranylgeranyltransferase type I subunit beta (PGGT1B), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1n4p | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASN | B:258 | B:258 | 58.0 | 0.362 | S | -169.3 | -62.5 | 58.0 | 0.362 | 0.0 |
HOH |
5.443 |
ND2 |
O |
||
| ASN | D:258 | D:258 | 64.0 | 0.4 | S | -166.8 | -61.4 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 59.0 | 0.369 | S | -167.7 | -62.3 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 58.0 | 0.362 | S | -170.3 | -62.0 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 60.0 | 0.375 | S | -168.9 | -62.1 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 64.0 | 0.4 | S | -169.0 | -64.2 | NA | NA | NA | |||||||||||||
| 1n4q | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASN | B:258 | B:258 | 58.0 | 0.362 | S | -168.1 | -65.4 | 58.0 | 0.362 | 0.0 |
HOH |
5.775 |
O |
O |
||
| ASN | D:258 | D:258 | 65.0 | 0.406 | S | -166.5 | -66.0 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 62.0 | 0.388 | S | -165.3 | -65.2 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 56.0 | 0.35 | S | -168.1 | -65.0 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 60.0 | 0.375 | S | -167.4 | -67.1 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 63.0 | 0.394 | S | -165.9 | -66.0 | NA | NA | NA | |||||||||||||
| 1n4r | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASN | B:258 | B:258 | 56.0 | 0.35 | S | -173.6 | -63.6 | 56.0 | 0.35 | 0.0 |
HOH |
5.788 |
O |
O |
||
| ASN | D:258 | D:258 | 64.0 | 0.4 | S | -170.8 | -63.9 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 57.0 | 0.356 | S | -169.9 | -63.4 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 56.0 | 0.35 | S | -172.1 | -63.2 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 59.0 | 0.369 | S | -171.7 | -63.4 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 60.0 | 0.375 | S | -170.8 | -63.8 | NA | NA | NA | |||||||||||||
| 1n4s | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASN | B:258 | B:258 | 59.0 | 0.369 | S | -172.3 | -65.3 | 59.0 | 0.369 | 0.0 |
HOH |
5.362 |
ND2 |
O |
||
| ASN | D:258 | D:258 | 63.0 | 0.394 | S | -169.3 | -64.4 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 61.0 | 0.381 | S | -169.0 | -65.1 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 57.0 | 0.356 | S | -171.1 | -64.4 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 60.0 | 0.375 | S | -170.9 | -64.7 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 63.0 | 0.394 | S | -169.3 | -64.5 | NA | NA | NA | |||||||||||||
| 1s64 | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-07-27 | ASN | B:258 | B:258 | 59.0 | 0.369 | S | -164.1 | -65.0 | 59.0 | 0.369 | 0.0 |
HOH |
3.763 |
CB |
O |
||
| ASN | D:258 | D:258 | 64.0 | 0.4 | S | -163.0 | -64.1 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 62.0 | 0.388 | S | -162.6 | -64.5 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 57.0 | 0.356 | S | -163.9 | -63.5 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 61.0 | 0.381 | S | -163.7 | -64.5 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 65.0 | 0.406 | S | -163.3 | -65.1 | NA | NA | NA | |||||||||||||
| 1tnb | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASN | B:258 | B:258 | 58.0 | 0.362 | S | -172.1 | -59.6 | 58.0 | 0.362 | 0.0 |
HOH |
5.662 |
O |
O |
||
| ASN | D:258 | D:258 | 60.0 | 0.375 | S | -171.2 | -60.1 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 56.0 | 0.35 | S | -169.4 | -60.2 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 60.0 | 0.375 | S | -169.2 | -60.7 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 58.0 | 0.362 | S | -169.9 | -59.3 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 60.0 | 0.375 | S | -169.6 | -59.6 | NA | NA | NA | |||||||||||||
| 1tno | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASN | B:258 | B:258 | 61.0 | 0.381 | S | -169.1 | -63.2 | 61.0 | 0.381 | 0.0 |
HOH |
5.658 |
O |
O |
||
| ASN | D:258 | D:258 | 60.0 | 0.375 | S | -165.3 | -63.9 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 61.0 | 0.381 | S | -165.3 | -63.2 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 60.0 | 0.375 | S | -164.8 | -62.8 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 61.0 | 0.381 | S | -167.0 | -61.9 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 64.0 | 0.4 | S | -164.8 | -62.5 | NA | NA | NA | |||||||||||||
| 1tnu | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASN | B:258 | B:258 | 60.0 | 0.375 | S | -169.8 | -63.7 | 59.0 | 0.369 | 0.006 |
A:Q04631:0.006 |
HOH |
5.600 |
O |
O |
|
| ASN | D:258 | D:258 | 58.0 | 0.362 | S | -168.7 | -64.0 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 61.0 | 0.381 | S | -167.0 | -64.2 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 59.0 | 0.369 | S | -167.6 | -63.3 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 60.0 | 0.375 | S | -168.6 | -63.2 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 63.0 | 0.394 | S | -167.5 | -63.1 | NA | NA | NA | |||||||||||||
| 1tny | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASN | B:258 | B:258 | 58.0 | 0.362 | S | -165.8 | -63.4 | 58.0 | 0.362 | 0.0 |
HOH |
5.475 |
O |
O |
||
| ASN | D:258 | D:258 | 64.0 | 0.4 | S | -164.4 | -63.3 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 62.0 | 0.388 | S | -164.7 | -62.5 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 60.0 | 0.375 | S | -163.7 | -63.5 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 62.0 | 0.388 | S | -166.0 | -63.5 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 63.0 | 0.394 | S | -164.5 | -62.4 | NA | NA | NA | |||||||||||||
| 1tnz | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASN | B:258 | B:258 | 56.0 | 0.35 | S | -175.8 | -64.2 | 56.0 | 0.35 | 0.0 |
HOH |
7.664 |
O |
O |
||
| ASN | D:258 | D:258 | 60.0 | 0.375 | S | -174.6 | -64.7 | NA | NA | NA | |||||||||||||
| ASN | F:258 | F:258 | 56.0 | 0.35 | S | -174.3 | -64.3 | NA | NA | NA | |||||||||||||
| ASN | H:258 | H:258 | 58.0 | 0.362 | S | -174.8 | -64.7 | NA | NA | NA | |||||||||||||
| ASN | J:258 | J:258 | 55.0 | 0.344 | S | -173.9 | -63.6 | NA | NA | NA | |||||||||||||
| ASN | L:258 | L:258 | 58.0 | 0.362 | S | -174.7 | -64.4 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p53609-f1 | 1 | P53609 | 100.0 | 0.0 | ASN | A:258 | A:258 | 72.0 | 0.45 | S | -124.3 | -57.3 | |