Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 114573610 . C A CCDS4116.1:NM_005023.3:c.424Gta>Tta_NP_005014.2:p.142V>L Homo sapiens protein geranylgeranyltransferase type I subunit beta (PGGT1B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n4p 2 P53610 97.61 0.0 X-RAY
 2003-11-18 VAL B:142 B:142 7.0 0.045 S -89.9 123.3 7.0 0.045 0.0 HOH
 2.755
 O
 O
VAL D:142 D:142 8.0 0.052 S -91.6 124.6 NA NA NA
VAL F:142 F:142 8.0 0.052 S -91.0 124.2 NA NA NA
VAL H:142 H:142 6.0 0.039 S -90.5 124.1 NA NA NA
VAL J:142 J:142 8.0 0.052 S -90.3 123.7 NA NA NA
VAL L:142 L:142 8.0 0.052 S -89.8 124.1 NA NA NA
1n4q 2 P53610 97.61 0.0 X-RAY
 2003-11-18 VAL B:142 B:142 8.0 0.052 S -84.3 125.8 8.0 0.052 0.0 HOH
 8.462
 CG1
 O
VAL D:142 D:142 7.0 0.045 S -85.4 126.0 NA NA NA
VAL F:142 F:142 8.0 0.052 S -86.0 125.9 NA NA NA
VAL H:142 H:142 7.0 0.045 S -83.8 125.8 NA NA NA
VAL J:142 J:142 7.0 0.045 S -84.7 125.3 NA NA NA
VAL L:142 L:142 9.0 0.058 S -84.5 125.8 NA NA NA
1n4r 2 P53610 97.61 0.0 X-RAY
 2003-11-18 VAL B:142 B:142 7.0 0.045 S -87.6 121.0 7.0 0.045 0.0 HOH
 2.667
 O
 O
VAL D:142 D:142 8.0 0.052 S -89.6 122.1 NA NA NA
VAL F:142 F:142 8.0 0.052 S -88.8 121.1 NA NA NA
VAL H:142 H:142 7.0 0.045 S -88.4 121.8 NA NA NA
VAL J:142 J:142 6.0 0.039 S -89.1 121.2 NA NA NA
VAL L:142 L:142 5.0 0.032 S -89.0 121.8 NA NA NA
1n4s 2 P53610 97.61 0.0 X-RAY
 2003-11-18 VAL B:142 B:142 8.0 0.052 S -88.2 125.0 8.0 0.052 0.0 HOH
 2.623
 O
 O
VAL D:142 D:142 8.0 0.052 S -89.2 126.9 NA NA NA
VAL F:142 F:142 8.0 0.052 S -89.8 125.5 NA NA NA
VAL H:142 H:142 8.0 0.052 S -88.7 125.6 NA NA NA
VAL J:142 J:142 6.0 0.039 S -88.1 124.4 NA NA NA
VAL L:142 L:142 8.0 0.052 S -89.3 125.4 NA NA NA
1s64 2 P53610 97.61 0.0 X-RAY
 2004-07-27 VAL B:142 B:142 7.0 0.045 S -84.9 121.9 7.0 0.045 0.0 HOH
 2.709
 O
 O
VAL D:142 D:142 8.0 0.052 S -86.1 123.6 NA NA NA
VAL F:142 F:142 7.0 0.045 S -86.5 122.4 NA NA NA
VAL H:142 H:142 7.0 0.045 S -86.1 123.1 NA NA NA
VAL J:142 J:142 7.0 0.045 S -86.5 121.6 NA NA NA
VAL L:142 L:142 7.0 0.045 S -86.8 123.3 NA NA NA
1tnb 2 P53610 97.61 0.0 X-RAY
 2004-11-02 VAL B:142 B:142 8.0 0.052 S -88.7 127.6 8.0 0.052 0.0 HOH
 8.143
 CG1
 O
VAL D:142 D:142 8.0 0.052 S -89.6 127.1 NA NA NA
VAL F:142 F:142 9.0 0.058 S -90.6 127.0 NA NA NA
VAL H:142 H:142 8.0 0.052 S -89.8 126.5 NA NA NA
VAL J:142 J:142 6.0 0.039 S -89.4 126.5 NA NA NA
VAL L:142 L:142 8.0 0.052 S -89.0 127.2 NA NA NA
1tno 2 P53610 97.61 0.0 X-RAY
 2004-11-02 VAL B:142 B:142 9.0 0.058 S -88.6 128.6 9.0 0.058 0.0 HOH
 8.481
 CG1
 O
VAL D:142 D:142 8.0 0.052 S -91.6 127.7 NA NA NA
VAL F:142 F:142 9.0 0.058 S -90.5 128.1 NA NA NA
VAL H:142 H:142 9.0 0.058 S -89.7 127.8 NA NA NA
VAL J:142 J:142 6.0 0.039 S -89.2 126.5 NA NA NA
VAL L:142 L:142 8.0 0.052 S -88.5 128.5 NA NA NA
1tnu 2 P53610 97.61 0.0 X-RAY
 2004-11-02 VAL B:142 B:142 7.0 0.045 S -88.5 125.0 7.0 0.045 0.0 HOH
 8.408
 CG1
 O
VAL D:142 D:142 8.0 0.052 S -91.5 125.3 NA NA NA
VAL F:142 F:142 8.0 0.052 S -91.2 124.7 NA NA NA
VAL H:142 H:142 7.0 0.045 S -89.5 125.4 NA NA NA
VAL J:142 J:142 6.0 0.039 S -88.3 124.1 NA NA NA
VAL L:142 L:142 8.0 0.052 S -89.1 126.0 NA NA NA
1tny 2 P53610 97.61 0.0 X-RAY
 2004-11-02 VAL B:142 B:142 9.0 0.058 S -91.1 126.2 9.0 0.058 0.0 HOH
 8.352
 CG1
 O
VAL D:142 D:142 8.0 0.052 S -92.8 125.5 NA NA NA
VAL F:142 F:142 8.0 0.052 S -93.9 125.0 NA NA NA
VAL H:142 H:142 7.0 0.045 S -91.7 126.0 NA NA NA
VAL J:142 J:142 6.0 0.039 S -91.7 125.9 NA NA NA
VAL L:142 L:142 8.0 0.052 S -90.8 125.3 NA NA NA
1tnz 2 P53610 97.61 0.0 X-RAY
 2004-11-02 VAL B:142 B:142 7.0 0.045 S -91.0 120.7 7.0 0.045 0.0
VAL D:142 D:142 7.0 0.045 S -92.5 120.0 NA NA NA
VAL F:142 F:142 7.0 0.045 S -92.4 119.8 NA NA NA
VAL H:142 H:142 8.0 0.052 S -91.6 119.6 NA NA NA
VAL J:142 J:142 9.0 0.058 S -91.7 120.9 NA NA NA
VAL L:142 L:142 7.0 0.045 S -91.5 120.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53609-f1 1 P53609 100.0 0.0 VAL A:142 A:142 6.0 0.039 S -76.5 122.3