Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 114573634 . T A CCDS4116.1:NM_005023.3:c.400Att>Ttt_NP_005014.2:p.134I>F Homo sapiens protein geranylgeranyltransferase type I subunit beta (PGGT1B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n4p 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ILE B:134 B:134 9.0 0.051 H -60.5 -38.5 9.0 0.051 0.0 GRG
HOH
 9.805
3.510
 CD1
CD1
 C19
O
ILE D:134 D:134 11.0 0.063 H -58.2 -39.8 NA NA NA
ILE F:134 F:134 9.0 0.051 H -58.9 -40.7 NA NA NA
ILE H:134 H:134 1.0 0.006 H -58.7 -38.5 NA NA NA
ILE J:134 J:134 11.0 0.063 H -59.7 -38.7 NA NA NA
ILE L:134 L:134 10.0 0.057 H -60.3 -38.9 NA NA NA
1n4q 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ILE B:134 B:134 9.0 0.051 H -63.4 -38.2 9.0 0.051 0.0 HOH
 3.621
 CD1
 O
ILE D:134 D:134 9.0 0.051 H -61.9 -37.8 NA NA NA
ILE F:134 F:134 9.0 0.051 H -62.3 -38.6 NA NA NA
ILE H:134 H:134 1.0 0.006 H -63.3 -36.0 NA NA NA
ILE J:134 J:134 10.0 0.057 H -61.5 -38.9 NA NA NA
ILE L:134 L:134 10.0 0.057 H -63.4 -36.7 NA NA NA
1n4r 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ILE B:134 B:134 10.0 0.057 H -61.9 -37.4 10.0 0.057 0.0
ILE D:134 D:134 10.0 0.057 H -61.1 -36.7 NA NA NA
ILE F:134 F:134 10.0 0.057 H -62.5 -38.4 NA NA NA
ILE H:134 H:134 2.0 0.011 H -61.2 -36.2 NA NA NA
ILE J:134 J:134 11.0 0.063 H -61.3 -37.9 NA NA NA
ILE L:134 L:134 11.0 0.063 H -62.5 -38.7 NA NA NA
1n4s 2 P53610 97.61 0.0 X-RAY
 2003-11-18 ILE B:134 B:134 10.0 0.057 H -63.0 -38.9 10.0 0.057 0.0 GRG
HOH
 9.907
3.159
 CD1
O
 C19
O
ILE D:134 D:134 11.0 0.063 H -61.5 -39.4 NA NA NA
ILE F:134 F:134 10.0 0.057 H -61.5 -40.4 NA NA NA
ILE H:134 H:134 2.0 0.011 H -61.6 -38.5 NA NA NA
ILE J:134 J:134 11.0 0.063 H -62.2 -39.6 NA NA NA
ILE L:134 L:134 11.0 0.063 H -62.4 -40.2 NA NA NA
1s64 2 P53610 97.61 0.0 X-RAY
 2004-07-27 ILE B:134 B:134 10.0 0.057 H -59.9 -38.6 10.0 0.057 0.0 HOH
 2.826
 O
 O
ILE D:134 D:134 11.0 0.063 H -58.6 -38.5 NA NA NA
ILE F:134 F:134 10.0 0.057 H -58.8 -39.1 NA NA NA
ILE H:134 H:134 2.0 0.011 H -59.6 -36.8 NA NA NA
ILE J:134 J:134 11.0 0.063 H -60.0 -38.7 NA NA NA
ILE L:134 L:134 12.0 0.069 H -60.4 -39.1 NA NA NA
1tnb 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ILE B:134 B:134 9.0 0.051 H -59.5 -36.1 9.0 0.051 0.0 HOH
 3.522
 CD1
 O
ILE D:134 D:134 9.0 0.051 H -59.7 -36.7 NA NA NA
ILE F:134 F:134 9.0 0.051 H -60.1 -36.5 NA NA NA
ILE H:134 H:134 0.0 0.0 H -60.7 -35.8 NA NA NA
ILE J:134 J:134 10.0 0.057 H -60.1 -36.9 NA NA NA
ILE L:134 L:134 10.0 0.057 H -59.1 -36.5 NA NA NA
1tno 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ILE B:134 B:134 11.0 0.063 H -63.0 -36.6 11.0 0.063 0.0
ILE D:134 D:134 10.0 0.057 H -61.3 -37.5 NA NA NA
ILE F:134 F:134 9.0 0.051 H -63.4 -37.7 NA NA NA
ILE H:134 H:134 1.0 0.006 H -62.5 -36.1 NA NA NA
ILE J:134 J:134 10.0 0.057 H -62.7 -36.6 NA NA NA
ILE L:134 L:134 11.0 0.063 H -61.3 -37.3 NA NA NA
1tnu 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ILE B:134 B:134 10.0 0.057 H -60.5 -35.5 10.0 0.057 0.0 HOH
 3.323
 CD1
 O
ILE D:134 D:134 8.0 0.046 H -59.9 -35.9 NA NA NA
ILE F:134 F:134 9.0 0.051 H -60.7 -37.0 NA NA NA
ILE H:134 H:134 0.0 0.0 H -59.8 -35.6 NA NA NA
ILE J:134 J:134 9.0 0.051 H -60.3 -36.5 NA NA NA
ILE L:134 L:134 10.0 0.057 H -60.8 -35.1 NA NA NA
1tny 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ILE B:134 B:134 10.0 0.057 H -60.4 -36.7 10.0 0.057 0.0 HOH
 3.517
 CD1
 O
ILE D:134 D:134 9.0 0.051 H -59.8 -38.7 NA NA NA
ILE F:134 F:134 8.0 0.046 H -60.5 -37.9 NA NA NA
ILE H:134 H:134 0.0 0.0 H -61.2 -36.6 NA NA NA
ILE J:134 J:134 10.0 0.057 H -60.0 -37.8 NA NA NA
ILE L:134 L:134 10.0 0.057 H -59.7 -36.8 NA NA NA
1tnz 2 P53610 97.61 0.0 X-RAY
 2004-11-02 ILE B:134 B:134 9.0 0.051 H -59.3 -33.6 9.0 0.051 0.0
ILE D:134 D:134 8.0 0.046 H -58.0 -34.3 NA NA NA
ILE F:134 F:134 9.0 0.051 H -59.5 -36.1 NA NA NA
ILE H:134 H:134 0.0 0.0 H -59.6 -33.8 NA NA NA
ILE J:134 J:134 9.0 0.051 H -57.8 -36.0 NA NA NA
ILE L:134 L:134 10.0 0.057 H -60.0 -33.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53609-f1 1 P53609 100.0 0.0 ILE A:134 A:134 9.0 0.051 H -71.1 -41.0