Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 114588909 | . | C | A | CCDS4116.1:NM_005023.3:c.184Gat>Tat_NP_005014.2:p.62D>Y | Homo sapiens protein geranylgeranyltransferase type I subunit beta (PGGT1B), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1n4p | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASP | B:62 | B:62 | 94.0 | 0.627 | T | 52.2 | 58.8 | 94.0 | 0.627 | 0.0 |
HOH |
8.138 |
OD1 |
O |
||
| ASP | D:62 | D:62 | 93.0 | 0.62 | T | 55.0 | 54.8 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 101.0 | 0.673 | T | 60.7 | 50.8 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 96.0 | 0.64 | T | 56.3 | 55.8 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 97.0 | 0.647 | T | 55.7 | 60.8 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 89.0 | 0.593 | T | 52.8 | 52.3 | NA | NA | NA | |||||||||||||
| 1n4q | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASP | B:62 | B:62 | 97.0 | 0.647 | T | 51.8 | 59.1 | 97.0 | 0.647 | 0.0 |
HOH |
7.732 |
OD1 |
O |
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| ASP | D:62 | D:62 | 95.0 | 0.633 | T | 52.2 | 52.6 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 95.0 | 0.633 | T | 61.8 | 48.2 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 95.0 | 0.633 | T | 58.5 | 51.0 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 99.0 | 0.66 | T | 60.5 | 54.3 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 91.0 | 0.607 | T | 54.6 | 50.6 | NA | NA | NA | |||||||||||||
| 1n4r | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASP | B:62 | B:62 | 100.0 | 0.667 | T | 52.7 | 55.6 | 100.0 | 0.667 | 0.0 |
HOH |
8.336 |
OD1 |
O |
||
| ASP | D:62 | D:62 | 89.0 | 0.593 | T | 54.2 | 54.5 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 103.0 | 0.687 | T | 59.8 | 50.4 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 99.0 | 0.66 | T | 55.1 | 60.5 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 96.0 | 0.64 | T | 53.0 | 61.3 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 89.0 | 0.593 | T | 52.9 | 56.8 | NA | NA | NA | |||||||||||||
| 1n4s | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2003-11-18 | ASP | B:62 | B:62 | 95.0 | 0.633 | T | 51.6 | 55.7 | 95.0 | 0.633 | 0.0 |
HOH |
2.941 |
C |
O |
||
| ASP | D:62 | D:62 | 92.0 | 0.613 | T | 51.6 | 53.9 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 103.0 | 0.687 | T | 60.7 | 49.2 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 93.0 | 0.62 | T | 54.8 | 58.0 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 93.0 | 0.62 | T | 52.2 | 61.8 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 88.0 | 0.587 | T | 50.5 | 54.1 | NA | NA | NA | |||||||||||||
| 1s64 | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-07-27 | ASP | B:62 | B:62 | 96.0 | 0.64 | T | 55.3 | 54.4 | 96.0 | 0.64 | 0.0 |
HOH |
3.028 |
OD1 |
O |
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| ASP | D:62 | D:62 | 93.0 | 0.62 | T | 52.3 | 51.3 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 101.0 | 0.673 | T | 59.5 | 48.2 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 97.0 | 0.647 | T | 53.2 | 60.1 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 94.0 | 0.627 | T | 51.1 | 62.6 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 94.0 | 0.627 | T | 52.2 | 55.0 | NA | NA | NA | |||||||||||||
| 1tnb | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASP | B:62 | B:62 | 100.0 | 0.667 | T | 53.3 | 61.4 | 100.0 | 0.667 | 0.0 |
HOH |
9.011 |
N |
O |
||
| ASP | D:62 | D:62 | 87.0 | 0.58 | T | 55.2 | 58.4 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 89.0 | 0.593 | T | 57.6 | 50.9 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 90.0 | 0.6 | T | 53.7 | 65.1 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 96.0 | 0.64 | T | 57.1 | 65.1 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 88.0 | 0.587 | T | 51.4 | 61.5 | NA | NA | NA | |||||||||||||
| 1tno | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASP | B:62 | B:62 | 98.0 | 0.653 | T | 53.1 | 59.1 | 98.0 | 0.653 | 0.0 |
MES |
3.917 |
OD2 |
C2 |
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| ASP | D:62 | D:62 | 93.0 | 0.62 | T | 52.2 | 59.4 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 94.0 | 0.627 | T | 58.2 | 48.0 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 93.0 | 0.62 | T | 55.4 | 62.5 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 95.0 | 0.633 | T | 54.4 | 63.8 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 92.0 | 0.613 | T | 52.6 | 57.3 | NA | NA | NA | |||||||||||||
| 1tnu | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASP | B:62 | B:62 | 99.0 | 0.66 | T | 54.5 | 57.7 | 99.0 | 0.66 | 0.0 |
HOH |
9.169 |
N |
O |
||
| ASP | D:62 | D:62 | 89.0 | 0.593 | T | 51.0 | 56.7 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 86.0 | 0.573 | T | 59.0 | 47.4 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 94.0 | 0.627 | T | 54.9 | 60.0 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 93.0 | 0.62 | T | 56.9 | 63.7 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 92.0 | 0.613 | T | 54.0 | 59.4 | NA | NA | NA | |||||||||||||
| 1tny | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASP | B:62 | B:62 | 93.0 | 0.62 | T | 52.4 | 59.6 | 93.0 | 0.62 | 0.0 |
HOH |
6.727 |
OD1 |
O |
||
| ASP | D:62 | D:62 | 96.0 | 0.64 | T | 50.3 | 57.6 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 91.0 | 0.607 | T | 59.8 | 46.6 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 95.0 | 0.633 | T | 52.1 | 61.1 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 95.0 | 0.633 | T | 58.2 | 58.8 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 87.0 | 0.58 | T | 50.0 | 58.5 | NA | NA | NA | |||||||||||||
| 1tnz | 2 | P53610 | 97.61 | 0.0 |
X-RAY |
2004-11-02 | ASP | B:62 | B:62 | 103.0 | 0.687 | T | 54.1 | 61.6 | 103.0 | 0.687 | 0.0 | ||||||
| ASP | D:62 | D:62 | 95.0 | 0.633 | T | 55.8 | 61.5 | NA | NA | NA | |||||||||||||
| ASP | F:62 | F:62 | 88.0 | 0.587 | T | 59.2 | 55.8 | NA | NA | NA | |||||||||||||
| ASP | H:62 | H:62 | 98.0 | 0.653 | T | 59.3 | 66.0 | NA | NA | NA | |||||||||||||
| ASP | J:62 | J:62 | 93.0 | 0.62 | T | 53.6 | 65.7 | NA | NA | NA | |||||||||||||
| ASP | L:62 | L:62 | 90.0 | 0.6 | T | 55.2 | 61.3 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p53609-f1 | 1 | P53609 | 100.0 | 0.0 | ASP | A:62 | A:62 | 86.0 | 0.573 | T | 52.9 | 56.5 | |